Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 2.0e-39 165.2 80 100.0
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 8.8e-27 123.2 62 95.2
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 8.8e-27 123.2 62 95.2
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 7.4e-26 120.2 60 93.3
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 6.9e-24 113.6 73 72.6
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 1.2e-23 112.8 59 88.1
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 1.5e-23 112.5 59 88.1
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 2.0e-23 112.1 59 88.1
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 2.0e-23 112.1 59 86.4
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 2.6e-23 111.7 59 86.4
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.6e-23 111.7 72 69.4
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.4e-23 111.3 59 86.4
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 3.4e-23 111.3 59 86.4
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 4.5e-23 110.9 59 86.4
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 4.5e-23 110.9 59 86.4
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 4.5e-23 110.9 60 83.3
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 5.9e-23 110.5 64 82.8
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 7.7e-23 110.2 60 81.7
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 7.7e-23 110.2 60 81.7
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.0e-22 109.8 59 84.7
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.0e-22 109.8 72 70.8
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.0e-22 109.8 72 70.8
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 1.3e-22 109.4 59 84.7
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.3e-22 109.4 59 83.1
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 1.3e-22 109.4 59 79.7
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.3e-22 109.4 59 83.1
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 1.7e-22 109.0 60 81.7
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 1.7e-22 109.0 59 83.1
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 2.2e-22 108.6 59 81.4
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.2e-22 108.6 59 83.1
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 2.9e-22 108.2 59 79.7
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 2.9e-22 108.2 59 81.4
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 2.9e-22 108.2 72 69.4
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.9e-22 108.2 59 83.1
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 3.8e-22 107.8 60 80.0
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 3.8e-22 107.8 60 81.7
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 3.8e-22 107.8 60 81.7
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 3.8e-22 107.8 59 84.7
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 3.8e-22 107.8 59 81.4
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 5.0e-22 107.5 59 83.1
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 5.0e-22 107.5 59 83.1
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 6.5e-22 107.1 59 83.1
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 6.5e-22 107.1 59 81.4
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 6.5e-22 107.1 60 81.7
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 6.5e-22 107.1 60 81.7
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 6.5e-22 107.1 60 81.7
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 6.5e-22 107.1 59 83.1
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 8.5e-22 106.7 62 79.0
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 8.5e-22 106.7 59 79.7
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 1.1e-21 106.3 66 71.2
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 1.1e-21 106.3 65 75.4
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 1.1e-21 106.3 65 75.4
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 1.1e-21 106.3 66 74.2
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.4e-21 105.9 60 78.3
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.4e-21 105.9 59 81.4
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 1.4e-21 105.9 59 78.0
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 1.4e-21 105.9 60 81.7
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 2.5e-21 105.1 62 77.4
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 2.5e-21 105.1 60 71.7
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 2.5e-21 105.1 59 78.0
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.5e-21 105.1 59 78.0
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 2.5e-21 105.1 59 78.0
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 3.2e-21 104.8 59 81.4
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 3.2e-21 104.8 60 71.7
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 3.2e-21 104.8 59 78.0
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 3.2e-21 104.8 64 73.4
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.2e-21 104.8 60 76.7
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.2e-21 104.8 59 79.7
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 3.2e-21 104.8 59 78.0
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 4.2e-21 104.4 59 78.0
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 4.2e-21 104.4 64 76.6
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 4.2e-21 104.4 60 75.0
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.2e-21 104.4 61 75.4
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 4.2e-21 104.4 59 79.7
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.2e-21 104.4 60 76.7
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 4.2e-21 104.4 67 71.6
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 4.2e-21 104.4 67 71.6
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 4.2e-21 104.4 60 76.7
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 4.2e-21 104.4 62 75.8
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 5.5e-21 104.0 60 76.7
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 5.5e-21 104.0 59 79.7
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 7.2e-21 103.6 59 76.3
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 7.2e-21 103.6 59 79.7
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 7.2e-21 103.6 60 78.3
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 7.2e-21 103.6 68 73.5
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 9.4e-21 103.2 59 79.7
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.2e-20 102.8 59 78.0
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 1.6e-20 102.4 62 74.2
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 2.1e-20 102.1 59 76.3
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 2.1e-20 102.1 72 63.9
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 2.7e-20 101.7 59 74.6
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 3.6e-20 101.3 72 61.1
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.6e-20 101.3 59 74.6
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 3.6e-20 101.3 59 76.3
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 3.6e-20 101.3 59 76.3
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 4.7e-20 100.9 59 76.3
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 7.9e-20 100.1 60 73.3
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 7.9e-20 100.1 60 73.3
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 7.9e-20 100.1 59 76.3
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 7.9e-20 100.1 60 70.0
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 3.0e-19 98.2 59 72.9
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 6.7e-19 97.1 60 68.3
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 8.8e-19 96.7 53 77.4
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 8.8e-19 96.7 59 71.2
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 1.1e-18 96.3 59 69.5
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 1.1e-18 96.3 53 83.0
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 1.1e-18 96.3 60 68.3
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 1.5e-18 95.9 56 76.8
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 1.5e-18 95.9 59 69.5
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 2.0e-18 95.5 62 71.0
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 4.4e-18 94.4 59 71.2
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 5.7e-18 94.0 72 62.5
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 7.4e-18 93.6 59 67.8
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 9.7e-18 93.2 61 70.5
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 9.7e-18 93.2 59 64.4
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.3e-17 92.8 60 63.3
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 2.2e-17 92.0 57 70.2
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 2.8e-17 91.7 70 62.9
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 2.8e-17 91.7 70 62.9
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 2.8e-17 91.7 70 62.9
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 2.8e-17 91.7 70 62.9
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 3.7e-17 91.3 74 52.7
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 1.1e-16 89.7 52 73.1
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.4e-16 89.4 61 60.7
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 1.8e-16 89.0 60 65.0
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.4e-16 88.6 72 52.8
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 3.1e-16 88.2 59 66.1
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 7.0e-16 87.0 60 60.0
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.2e-15 86.3 65 58.5
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.2e-15 86.3 64 60.9
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 3.5e-15 84.7 59 61.0
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 4.5e-15 84.3 59 61.0
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 4.5e-15 84.3 59 61.0
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 4.5e-15 84.3 59 61.0
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 4.5e-15 84.3 59 61.0
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 4.5e-15 84.3 59 61.0
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.2e-14 82.0 58 56.9
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 2.2e-14 82.0 62 58.1
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.9e-14 81.6 58 56.9
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.5e-13 79.3 59 54.2
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 5.2e-11 70.9 75 50.7
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 9.7e-10 66.6 56 55.4
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 2.4e-08 62.0 69 46.4
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.0e-07 58.9 66 39.4
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 1.7e-06 55.8 42 61.9


User provided reference genes

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