Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 1.8e-148 529.3 277 100.0
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 5.0e-146 521.2 277 97.8
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 5.0e-146 521.2 277 97.8
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 2.8e-141 505.4 277 95.7
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 2.1e-136 489.2 276 92.4
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 7.0e-124 447.6 274 82.8
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.0e-122 443.7 274 82.5
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.7e-122 443.0 274 82.8
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.1e-121 440.3 274 82.5
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.1e-121 440.3 274 82.5
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.9e-121 439.5 274 81.0
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 2.5e-121 439.1 274 82.5
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 3.3e-121 438.7 274 81.0
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 3.3e-121 438.7 273 81.7
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 9.5e-121 437.2 277 80.9
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.2e-120 436.8 277 80.9
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.2e-120 436.8 274 81.8
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.8e-120 435.6 274 81.8
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 3.6e-120 435.3 274 81.0
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 3.6e-120 435.3 273 81.0
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 8.0e-120 434.1 274 81.8
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 1.4e-119 433.3 274 81.4
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 3.1e-119 432.2 277 80.5
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 4.0e-119 431.8 274 81.0
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 5.2e-119 431.4 274 80.3
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 1.5e-118 429.9 274 80.3
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 2.6e-118 429.1 274 79.9
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 4.4e-118 428.3 274 79.2
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.4e-118 428.3 285 79.3
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.3e-117 426.8 274 80.3
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 2.2e-117 426.0 274 78.8
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 2.2e-117 426.0 274 77.7
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 2.2e-117 426.0 274 79.2
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.9e-117 425.6 275 80.0
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 4.9e-117 424.9 274 78.8
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 1.4e-116 423.3 274 79.2
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.9e-116 422.9 274 78.8
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 2.4e-116 422.5 274 79.6
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 2.4e-116 422.5 277 76.9
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 2.4e-116 422.5 274 77.4
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 9.2e-116 420.6 274 78.8
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.2e-115 420.2 274 78.5
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 2.0e-115 419.5 274 78.1
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 2.0e-115 419.5 277 76.2
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 2.0e-115 419.5 277 77.6
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 2.7e-115 419.1 272 78.3
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 2.7e-115 419.1 273 79.9
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 2.7e-115 419.1 274 77.7
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 3.5e-115 418.7 274 78.8
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 6.0e-115 417.9 271 79.3
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.0e-114 417.2 272 79.8
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 2.3e-114 416.0 276 76.4
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 3.0e-114 415.6 270 78.9
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 3.0e-114 415.6 273 78.0
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 5.0e-114 414.8 274 78.1
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.5e-113 413.3 274 76.6
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 1.5e-113 413.3 272 79.4
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 2.5e-113 412.5 272 78.7
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 4.3e-113 411.8 272 77.9
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 4.3e-113 411.8 274 77.0
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 4.3e-113 411.8 274 77.0
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 5.6e-113 411.4 272 79.0
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 5.6e-113 411.4 274 76.6
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 9.5e-113 410.6 274 76.3
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 9.5e-113 410.6 272 77.2
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 2.1e-112 409.5 274 75.9
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 2.1e-112 409.5 272 77.2
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 2.1e-112 409.5 272 77.2
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 2.8e-112 409.1 274 75.9
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 3.6e-112 408.7 274 75.9
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 4.7e-112 408.3 274 76.3
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 6.2e-112 407.9 274 75.9
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.4e-111 406.8 274 77.0
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 1.8e-111 406.4 270 79.3
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 1.8e-111 406.4 272 76.8
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.8e-111 406.4 278 76.3
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 3.1e-111 405.6 274 75.5
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 3.1e-111 405.6 304 71.4
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.0e-111 405.2 274 76.3
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 6.8e-111 404.4 272 77.2
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 2.0e-110 402.9 274 76.3
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.0e-110 402.9 273 76.2
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-109 400.2 274 75.9
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-109 400.2 274 75.9
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-109 400.2 274 75.9
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 2.2e-109 399.4 290 72.8
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 3.7e-109 398.7 283 73.9
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 4.9e-109 398.3 274 75.9
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 4.9e-109 398.3 274 76.3
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.4e-108 396.7 275 75.3
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 4.1e-108 395.2 278 74.8
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.1e-107 392.9 270 76.7
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 1.7e-106 389.8 274 73.0
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.3e-106 389.4 270 76.7
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.1e-105 387.1 266 74.8
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 7.3e-105 384.4 316 65.5
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 6.2e-104 381.3 269 72.5
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.3e-103 379.4 274 74.8
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 5.2e-103 378.3 269 72.1
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 2.6e-102 375.9 274 70.4
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.3e-101 373.6 333 62.8
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.7e-101 373.2 288 69.1
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.9e-100 369.8 369 58.3
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.2e-99 367.1 270 70.7
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.6e-99 366.7 272 69.5
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.7e-98 363.2 269 70.3
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.3e-98 362.8 322 63.0
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 8.6e-98 360.9 269 69.5
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.5e-97 360.1 248 76.6
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.2e-96 357.1 268 66.4
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 8.1e-96 354.4 257 70.8
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 2.4e-95 352.8 268 65.3
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.3e-93 347.1 271 66.8
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 3.2e-92 342.4 272 61.8
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 1.7e-90 336.7 273 62.3
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.3e-90 336.3 263 65.8
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.5e-89 332.8 211 81.5
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 2.0e-86 323.2 253 66.8
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 9.9e-86 320.9 488 44.1
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.7e-85 320.1 269 62.1
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.9e-85 319.3 488 43.9
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 9.3e-84 314.3 253 66.4
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-82 310.1 280 60.4
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 2.3e-82 309.7 256 65.6
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 3.0e-82 309.3 257 65.8
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 5.1e-82 308.5 280 60.4
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 6.2e-80 301.6 263 59.7
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-79 300.4 280 59.3
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 1.4e-79 300.4 266 59.4
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 2.4e-79 299.7 280 60.0
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 3.1e-79 299.3 280 59.6
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 9.9e-78 294.3 263 58.2
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.1e-76 290.8 263 57.4
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 6.0e-75 285.0 263 57.0
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 1.3e-74 283.9 261 62.1
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.4e-71 273.9 277 53.4
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.0e-71 272.3 297 56.6
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 5.3e-71 271.9 226 64.6
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 5.8e-70 268.5 281 55.9
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 2.9e-69 266.2 254 58.7
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 3.8e-69 265.8 161 80.7
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.4e-68 263.8 264 53.0
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 1.3e-61 240.7 264 50.8
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 2.5e-57 226.5 137 82.5
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 5.7e-57 225.3 252 51.2
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.6e-56 223.8 274 50.0
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.5e-54 217.2 267 49.4
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-53 214.2 129 84.5
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.2e-46 191.0 138 72.5
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.1e-44 184.5 130 73.1
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.2e-44 183.0 412 35.0
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.6e-43 179.5 161 64.0
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 2.3e-42 176.8 136 64.7
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.2e-42 175.6 148 62.2
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 7.4e-41 171.8 218 47.7
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.3e-37 161.0 96 83.3
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.9e-36 157.1 131 61.8
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.0e-34 149.4 121 65.3
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 9.1e-31 138.3 266 35.0
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.9e-28 130.6 141 51.1
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 2.5e-28 130.2 139 54.0
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 9.4e-28 128.3 264 32.2
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 9.8e-25 118.2 290 28.3
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.7e-22 110.2 70 81.4
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.9e-21 106.7 150 45.3
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 5.5e-20 102.4 111 53.2
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 2.3e-18 97.1 83 57.8
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 2.3e-18 97.1 68 72.1
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.0e-17 94.0 72 61.1
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.0e-17 94.0 72 61.1
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 3.4e-17 93.2 69 65.2
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 9.8e-17 91.7 72 59.7
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 1.7e-16 90.9 52 86.5
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 1.7e-16 90.9 72 65.3
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-16 90.5 52 84.6
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-16 90.5 52 84.6
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.8e-16 90.1 72 59.7
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 4.9e-16 89.4 52 84.6
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-15 88.2 52 84.6
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.4e-15 87.8 59 72.9
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 7.0e-15 85.5 53 79.2
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 9.2e-15 85.1 50 82.0
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 1.9e-12 77.4 68 61.8
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 4.4e-09 66.2 52 59.6
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.8e-07 60.8 40 75.0


User provided reference genes

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