Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G003670 Citrullus lanatus HOM05D007492 ORTHO05D009510 2.3e-48 195.3 103 100.0
Sed0027371 Sechium edule HOM05D007492 ORTHO05D009510 5.8e-31 137.5 102 75.5
MELO3C026338.2 Cucumis melo HOM05D007492 ORTHO05D009510 1.2e-25 119.8 74 83.8
CiPaw.10G035300 Carya illinoinensis HOM05D007492 ORTHO05D009510 1.1e-21 106.7 92 63.0
QL07p003630 Quercus lobata HOM05D007492 ORTHO05D009510 1.9e-21 105.9 91 63.7
Cfa016781 Carpinus fangiana HOM05D007492 ORTHO05D009510 1.2e-20 103.2 92 62.0
Glyma.10G107400 Glycine max HOM05D007492 ORTHO05D009510 2.7e-20 102.1 92 62.0
Potri.006G046800 Populus trichocarpa HOM05D007492 ORTHO05D009510 2.3e-19 99.0 92 58.7
Ca_12247_v3 Cicer arietinum L. HOM05D007492 ORTHO05D009510 3.0e-19 98.6 92 58.7
Sabra06G0032400 Salix brachista HOM05D007492 ORTHO05D009510 3.0e-19 98.6 92 59.8
Manes.08G052300 Manihot esculenta HOM05D007492 ORTHO05D009510 3.9e-19 98.2 96 60.4
Lj5g0022766 Lotus japonicus HOM05D007492 ORTHO05D009510 8.7e-19 97.1 92 59.8
Psat0s33g0080 Pisum sativum HOM05D007492 ORTHO05D009510 1.1e-18 96.7 92 55.4
arahy.Tifrunner.gnm1.ann1.BXP26X Arachis hypogaea HOM05D007492 ORTHO05D009510 1.9e-18 95.9 92 56.5
arahy.Tifrunner.gnm1.ann1.7L65TE Arachis hypogaea HOM05D007492 ORTHO05D009510 2.5e-18 95.5 92 56.5
Lalb_Chr21g0316561 Lupinus albus HOM05D007492 ORTHO05D009510 2.5e-18 95.5 92 54.3
Medtr1g052270 Medicago truncatula HOM05D007492 ORTHO05D009510 2.5e-18 95.5 92 55.4
Rhsim04G0106100 Rhododendron simsii HOM05D007492 ORTHO05D009510 5.6e-18 94.4 92 55.4
TWI77G0158 Tripterygium wilfordii HOM05D007492 ORTHO05D009510 5.6e-18 94.4 92 56.5
CANSAT80G0939 Cannabis sativa HOM05D007492 ORTHO05D009510 7.3e-18 94.0 91 60.4
CANSAT80G1179 Cannabis sativa HOM05D007492 ORTHO05D009510 7.3e-18 94.0 91 60.4
Oeu023131.1 Olea europaea HOM05D007492 ORTHO05D009510 7.3e-18 94.0 90 54.4
TAR636G3489 Trochodendron aralioides HOM05D007492 ORTHO05D009510 7.3e-18 94.0 92 55.4
MSTRG.19841 Avicennia marina HOM05D007492 ORTHO05D009510 1.3e-17 93.2 92 55.4
Dinv39655 Davidia involucrata HOM05D007492 ORTHO05D009510 1.6e-17 92.8 92 58.7
RcHm_v2.0_Chr3g0483561 Rosa chinensis HOM05D007492 ORTHO05D009510 2.8e-17 92.0 102 58.8
PGR004G0419 Punica granatum HOM05D007492 ORTHO05D009510 3.6e-17 91.7 95 52.6
SalBow6G0030 Salvia bowleyana HOM05D007492 ORTHO05D009510 3.6e-17 91.7 92 53.3
SalBow6G0474 Salvia bowleyana HOM05D007492 ORTHO05D009510 3.6e-17 91.7 92 53.3
Phvul.007G250800 Phaseolus vulgaris HOM05D007492 ORTHO05D009510 6.2e-17 90.9 92 54.3
FAN05G0111 Fragaria x ananassa HOM05D007492 ORTHO05D009510 3.1e-16 88.6 103 55.3
FAN02G2710 Fragaria x ananassa HOM05D007492 ORTHO05D009510 9.0e-16 87.0 103 54.4
CDE04G0450 Ceratophyllum demersum HOM05D007492 ORTHO05D009510 1.2e-15 86.7 92 52.2
FAN14G3877 Fragaria x ananassa HOM05D007492 ORTHO05D009510 1.2e-15 86.7 103 54.4
SGA_v2.0_scaffold105G30374 Striga asiatica HOM05D007492 ORTHO05D009510 1.5e-15 86.3 92 50.0
Solyc04g150113.1 Solanum lycopersicum HOM05D007492 ORTHO05D009510 2.0e-15 85.9 94 48.9
DCAR_013612 Daucus carota HOM05D007492 ORTHO05D009510 2.6e-15 85.5 92 48.9
Sc19g0006630 Simmondsia chinensis HOM05D007492 ORTHO05D009510 2.6e-15 85.5 94 52.1
Hma1.2p1_0005F.1_g004460 Hydrangea macrophylla HOM05D007492 ORTHO05D009510 4.4e-15 84.7 97 50.5
Prupe.7G053700 Prunus persica HOM05D007492 ORTHO05D009510 4.4e-15 84.7 96 54.2
MD12G1082300 Malus domestica HOM05D007492 ORTHO05D009510 5.8e-15 84.3 91 57.1
PGSC0003DMG400012711 Solanum tuberosum HOM05D007492 ORTHO05D009510 5.8e-15 84.3 94 47.9
Atru.chr1.1236 Acer truncatum HOM05D007492 ORTHO05D009510 9.9e-15 83.6 96 53.1
Sopen04g008400 Solanum pennellii HOM05D007492 ORTHO05D009510 9.9e-15 83.6 94 48.9
Cc06_g18080 Coffea canephora HOM05D007492 ORTHO05D009510 1.7e-14 82.8 92 48.9
TPR.G19665 Trifolium pratense HOM05D007492 ORTHO05D009510 2.2e-14 82.4 107 46.7
Actinidia38130 Actinidia chinensis HOM05D007492 ORTHO05D009510 2.9e-14 82.0 92 47.8
Duzib106G1025 Durio zibethinus HOM05D007492 ORTHO05D009510 3.8e-14 81.6 90 52.2
Nitab4.5_0000826g0210 Nicotiana tabacum HOM05D007492 ORTHO05D009510 6.4e-14 80.9 90 51.1
Gorai.006G135800 Gossypium raimondii HOM05D007492 ORTHO05D009510 1.1e-13 80.1 90 50.0
Peaxi162Scf00130g00832 Petunia axillaris HOM05D007492 ORTHO05D009510 2.4e-13 79.0 90 46.7
Hund19134 Selenicereus undatus HOM05D007492 ORTHO05D009510 2.4e-13 79.0 97 49.5
Gohir.D09G117400 Gossypium hirsutum HOM05D007492 ORTHO05D009510 3.2e-13 78.6 90 48.9
Haze_19797 Corylus avellana HOM05D007492 ORTHO05D009510 4.2e-13 78.2 120 45.8
Lsat_1_v5_gn_5_160860 Lactuca sativa HOM05D007492 ORTHO05D009510 4.2e-13 78.2 92 45.7
Eucgr.K01714 Eucalyptus grandis HOM05D007492 ORTHO05D009510 5.4e-13 77.8 92 47.8
Eucgr.K02018 Eucalyptus grandis HOM05D007492 ORTHO05D009510 5.4e-13 77.8 92 47.8
Ciclev10005969m.g Citrus clementina HOM05D007492 ORTHO05D009510 7.1e-13 77.4 139 40.3
Thecc.05G151900 Theobroma cacao HOM05D007492 ORTHO05D009510 7.1e-13 77.4 90 48.9
Haze_19793 Corylus avellana HOM05D007492 ORTHO05D009510 1.2e-12 76.6 120 45.0
Migut.J01728 Erythranthe guttata HOM05D007492 ORTHO05D009510 1.6e-12 76.3 92 46.7
Gohir.A09G121300 Gossypium hirsutum HOM05D007492 ORTHO05D009510 1.6e-12 76.3 90 48.9
BcaB02g07611 Brassica carinata HOM05D007492 ORTHO05D009510 2.7e-12 75.5 92 46.7
BraA07t29999Z Brassica rapa HOM05D007492 ORTHO05D009510 1.0e-11 73.6 92 45.7
BcaC08g44833 Brassica carinata HOM05D007492 ORTHO05D009510 1.7e-11 72.8 92 45.7
C06p24390 Brassica napus HOM05D007492 ORTHO05D009510 1.7e-11 72.8 92 45.7
HanXRQChr13g0395971 Helianthus annuus HOM05D007492 ORTHO05D009510 1.7e-11 72.8 95 45.3
Sp5g05280 Schrenkiella parvula HOM05D007492 ORTHO05D009510 2.3e-11 72.4 92 47.8
A07p23340 Brassica napus HOM05D007492 ORTHO05D009510 3.9e-11 71.6 92 44.6
BolC6t37587H Brassica oleracea HOM05D007492 ORTHO05D009510 3.9e-11 71.6 92 44.6
vmacro09057 Vaccinium macrocarpon HOM05D007492 ORTHO05D009510 3.9e-11 71.6 83 45.8
GSVIVG01033234001 Vitis vinifera HOM05D007492 ORTHO05D009510 3.9e-11 71.6 78 52.6
HPP92_012551 Vanilla planifolia HOM05D007492 ORTHO05D009510 8.7e-11 70.5 93 40.9
AL5G38860 Arabidopsis lyrata HOM05D007492 ORTHO05D009510 1.1e-10 70.1 95 43.2
HPP92_012476 Vanilla planifolia HOM05D007492 ORTHO05D009510 1.1e-10 70.1 94 41.5
ECA248G1814 Erigeron canadensis HOM05D007492 ORTHO05D009510 2.5e-10 68.9 92 42.4
ATR0721G123 Amborella trichopoda HOM05D007492 ORTHO05D009510 7.3e-10 67.4 95 41.1
Cpa.g.sc1210.1 Carica papaya HOM05D007492 ORTHO05D009510 1.3e-09 66.6 77 50.6
Os07g0661700 Oryza sativa ssp. japonica HOM05D007492 ORTHO05D009510 1.6e-09 66.2 93 44.1
THA.LOC104802018 Tarenaya hassleriana HOM05D007492 ORTHO05D009510 1.6e-09 66.2 91 44.0
Carub.0005s2417 Capsella rubella HOM05D007492 ORTHO05D009510 2.8e-09 65.5 95 38.9
CARHR167510 Cardamine hirsuta HOM05D007492 ORTHO05D009510 6.2e-09 64.3 90 42.2
AUR62026094 Chenopodium quinoa HOM05D007492 ORTHO05D009510 1.1e-08 63.5 99 41.4
Zm00001eb329920 Zea mays HOM05D007492 ORTHO05D009510 2.4e-08 62.4 105 43.8
Mapoly0061s0071 Marchantia polymorpha HOM05D007492 ORTHO05D009510 5.3e-08 61.2 95 41.1
Aqoxy2G00252 Aquilegia oxysepala HOM05D007492 ORTHO05D009510 1.5e-07 59.7 95 38.9
Thhalv10006333m.g Eutrema salsugineum HOM05D007492 ORTHO05D009510 9.9e-07 57.0 62 50.0
Aa31LG10G12190 Aethionema arabicum HOM05D007492 ORTHO05D009510 1.7e-06 56.2 89 41.6
Nitab4.5_0001618g0280 Nicotiana tabacum HOM05D007492 ORTHO05D009510 6.4e-06 54.3 74 43.2


User provided reference genes

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