Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G003370 Citrullus lanatus HOM05D000610 ORTHO05D004774 4.5e-200 701.0 355 100.0
MELO3C023103.2 Cucumis melo HOM05D000610 ORTHO05D004774 1.2e-99 367.5 300 69.3
Sed0024936 Sechium edule HOM05D000610 ORTHO05D004774 6.7e-95 351.7 303 67.0
CsaV3_4G011860 Cucumis sativus L. HOM05D000610 ORTHO05D004774 8.8e-95 351.3 300 68.0
Haze_19840 Corylus avellana HOM05D000610 ORTHO05D004774 3.3e-86 322.8 300 62.3
Cfa016807 Carpinus fangiana HOM05D000610 ORTHO05D004774 1.8e-84 317.0 304 59.9
Duzib128G1628 Durio zibethinus HOM05D000610 ORTHO05D004774 3.1e-84 316.2 300 60.0
Dinv18665 Davidia involucrata HOM05D000610 ORTHO05D004774 4.1e-84 315.8 300 61.7
Gohir.D01G120000 Gossypium hirsutum HOM05D000610 ORTHO05D004774 9.1e-84 314.7 300 60.0
Gorai.002G146400 Gossypium raimondii HOM05D000610 ORTHO05D004774 9.1e-84 314.7 300 60.3
Psat3g072960 Pisum sativum HOM05D000610 ORTHO05D004774 1.2e-83 314.3 304 60.2
Gohir.A01G131111 Gossypium hirsutum HOM05D000610 ORTHO05D004774 1.6e-83 313.9 300 59.7
Thecc.05G148900 Theobroma cacao HOM05D000610 ORTHO05D004774 2.6e-83 313.2 300 59.7
CiPaw.09G038900 Carya illinoinensis HOM05D000610 ORTHO05D004774 4.5e-83 312.4 300 60.3
TWI74G1635 Tripterygium wilfordii HOM05D000610 ORTHO05D004774 1.0e-82 311.2 300 60.3
TPR.G3701 Trifolium pratense HOM05D000610 ORTHO05D004774 2.9e-82 309.7 300 59.3
Ciclev10004128m.g Citrus clementina HOM05D000610 ORTHO05D004774 3.8e-82 309.3 301 59.1
Potri.006G049300 Populus trichocarpa HOM05D000610 ORTHO05D004774 1.1e-81 307.8 300 59.7
GSVIVG01033258001 Vitis vinifera HOM05D000610 ORTHO05D004774 1.9e-81 307.0 300 60.0
TWI53G1231 Tripterygium wilfordii HOM05D000610 ORTHO05D004774 2.5e-81 306.6 300 59.7
Duzib093G2237 Durio zibethinus HOM05D000610 ORTHO05D004774 4.2e-81 305.8 300 59.3
FAN09G1277 Fragaria x ananassa HOM05D000610 ORTHO05D004774 4.2e-81 305.8 300 58.3
arahy.Tifrunner.gnm1.ann1.LF6SQW Arachis hypogaea HOM05D000610 ORTHO05D004774 5.5e-81 305.4 300 56.7
AL4G40000 Arabidopsis lyrata HOM05D000610 ORTHO05D004774 7.2e-81 305.1 300 56.3
Lj1g0005409 Lotus japonicus HOM05D000610 ORTHO05D004774 7.2e-81 305.1 307 56.4
Prupe.7G058100 Prunus persica HOM05D000610 ORTHO05D004774 9.4e-81 304.7 300 59.0
Medtr7g091380 Medicago truncatula HOM05D000610 ORTHO05D004774 2.1e-80 303.5 300 59.0
Nn7g36312 Nelumbo nucifera HOM05D000610 ORTHO05D004774 2.1e-80 303.5 300 58.3
RcHm_v2.0_Chr3g0482761 Rosa chinensis HOM05D000610 ORTHO05D004774 2.1e-80 303.5 300 57.0
arahy.Tifrunner.gnm1.ann1.50CUSQ Arachis hypogaea HOM05D000610 ORTHO05D004774 2.7e-80 303.1 300 56.0
arahy.Tifrunner.gnm1.ann1.624G49 Arachis hypogaea HOM05D000610 ORTHO05D004774 2.7e-80 303.1 300 56.0
CARHR136790 Cardamine hirsuta HOM05D000610 ORTHO05D004774 2.7e-80 303.1 300 55.7
Eucgr.A02339 Eucalyptus grandis HOM05D000610 ORTHO05D004774 2.7e-80 303.1 300 58.7
Manes.09G020400 Manihot esculenta HOM05D000610 ORTHO05D004774 6.1e-80 302.0 300 58.7
COL.COLO4_08236 Corchorus olitorius HOM05D000610 ORTHO05D004774 1.0e-79 301.2 288 60.1
AT2G41700 Arabidopsis thaliana HOM05D000610 ORTHO05D004774 1.4e-79 300.8 301 56.5
DCAR_020494 Daucus carota HOM05D000610 ORTHO05D004774 1.4e-79 300.8 300 58.0
FvH4_6g24100 Fragaria vesca HOM05D000610 ORTHO05D004774 1.8e-79 300.4 300 57.7
FAN14G3175 Fragaria x ananassa HOM05D000610 ORTHO05D004774 1.8e-79 300.4 300 57.7
PGR004G2234 Punica granatum HOM05D000610 ORTHO05D004774 1.8e-79 300.4 300 57.0
MBI19_g13038_MAGBIO Magnolia biondii HOM05D000610 ORTHO05D004774 2.3e-79 300.1 304 56.6
Phvul.001G131150 Phaseolus vulgaris HOM05D000610 ORTHO05D004774 2.3e-79 300.1 300 58.7
Atru.chr1.1122 Acer truncatum HOM05D000610 ORTHO05D004774 4.0e-79 299.3 302 57.6
FAN02G4008 Fragaria x ananassa HOM05D000610 ORTHO05D004774 4.0e-79 299.3 300 57.3
Lalb_Chr25g0287161 Lupinus albus HOM05D000610 ORTHO05D004774 4.0e-79 299.3 300 58.0
Carub.0004s2397 Capsella rubella HOM05D000610 ORTHO05D004774 6.8e-79 298.5 301 55.5
MD12G1079400 Malus domestica HOM05D000610 ORTHO05D004774 6.8e-79 298.5 300 59.7
Cc06_g17650 Coffea canephora HOM05D000610 ORTHO05D004774 8.8e-79 298.1 300 56.3
Lsat_1_v5_gn_9_30620 Lactuca sativa HOM05D000610 ORTHO05D004774 8.8e-79 298.1 300 58.3
Oeu023112.1 Olea europaea HOM05D000610 ORTHO05D004774 1.5e-78 297.4 302 56.3
Actinidia39216 Actinidia chinensis HOM05D000610 ORTHO05D004774 2.0e-78 297.0 300 58.0
Migut.J01749 Erythranthe guttata HOM05D000610 ORTHO05D004774 2.6e-78 296.6 300 56.7
SEGI_25518 Sequoiadendron giganteum HOM05D000610 ORTHO05D004774 2.6e-78 296.6 305 54.4
Aqoxy1G00231 Aquilegia oxysepala HOM05D000610 ORTHO05D004774 4.4e-78 295.8 300 55.7
Sp4g23940 Schrenkiella parvula HOM05D000610 ORTHO05D004774 5.7e-78 295.4 300 55.7
SalBow6G0358 Salvia bowleyana HOM05D000610 ORTHO05D004774 7.5e-78 295.0 300 55.3
SalBow6G6580 Salvia bowleyana HOM05D000610 ORTHO05D004774 7.5e-78 295.0 300 55.3
CANSAT80G2124 Cannabis sativa HOM05D000610 ORTHO05D004774 1.3e-77 294.3 300 57.3
Glyma.03G136000 Glycine max HOM05D000610 ORTHO05D004774 1.3e-77 294.3 306 58.8
Thhalv10016127m.g Eutrema salsugineum HOM05D000610 ORTHO05D004774 2.8e-77 293.1 300 56.0
vmacro07838 Vaccinium macrocarpon HOM05D000610 ORTHO05D004774 2.8e-77 293.1 321 53.3
CSS0013319 Camellia sinensis var. sinensis HOM05D000610 ORTHO05D004774 6.3e-77 292.0 300 56.7
THA.LOC104824436 Tarenaya hassleriana HOM05D000610 ORTHO05D004774 6.3e-77 292.0 300 55.3
HanXRQChr10g0300621 Helianthus annuus HOM05D000610 ORTHO05D004774 1.4e-76 290.8 300 56.7
Aa31LG1G23710 Aethionema arabicum HOM05D000610 ORTHO05D004774 2.4e-76 290.0 305 52.8
Sc13g0001650 Simmondsia chinensis HOM05D000610 ORTHO05D004774 4.1e-76 289.3 288 58.7
Rhsim03G0027100 Rhododendron simsii HOM05D000610 ORTHO05D004774 2.7e-75 286.6 300 56.3
Nitab4.5_0009615g0020 Nicotiana tabacum HOM05D000610 ORTHO05D004774 3.5e-75 286.2 301 58.5
ECA247G3032 Erigeron canadensis HOM05D000610 ORTHO05D004774 4.5e-75 285.8 300 56.0
SGA_v2.0_scaffold69G23121 Striga asiatica HOM05D000610 ORTHO05D004774 1.0e-74 284.6 300 56.0
Sopen04g007980 Solanum pennellii HOM05D000610 ORTHO05D004774 1.3e-74 284.3 300 56.7
ATR0188G019 Amborella trichopoda HOM05D000610 ORTHO05D004774 1.7e-74 283.9 300 55.7
CAN.G676.30 Capsicum annuum HOM05D000610 ORTHO05D004774 1.7e-74 283.9 300 55.3
Nitab4.5_0000586g0130 Nicotiana tabacum HOM05D000610 ORTHO05D004774 3.8e-74 282.7 301 57.8
MSTRG.6422 Avicennia marina HOM05D000610 ORTHO05D004774 5.0e-74 282.3 300 55.0
PSO384G3904 Papaver somniferum HOM05D000610 ORTHO05D004774 8.5e-74 281.6 304 54.3
CDE05G2711 Ceratophyllum demersum HOM05D000610 ORTHO05D004774 1.9e-73 280.4 300 52.0
Solyc04g015970.3 Solanum lycopersicum HOM05D000610 ORTHO05D004774 2.1e-72 276.9 307 55.7
C03p27900 Brassica napus HOM05D000610 ORTHO05D004774 3.6e-72 276.2 292 55.1
Ah.04g151590 Amaranthus hybridus HOM05D000610 ORTHO05D004774 2.3e-71 273.5 300 54.3
AUR62024461 Chenopodium quinoa HOM05D000610 ORTHO05D004774 6.8e-71 271.9 300 54.3
AUR62026051 Chenopodium quinoa HOM05D000610 ORTHO05D004774 2.2e-69 266.9 300 53.7
EL10Ac3g07101 Beta vulgaris HOM05D000610 ORTHO05D004774 8.3e-69 265.0 304 53.6
HPP92_019406 Vanilla planifolia HOM05D000610 ORTHO05D004774 1.2e-67 261.2 301 49.5
HPP92_019408 Vanilla planifolia HOM05D000610 ORTHO05D004774 1.2e-67 261.2 301 49.5
BolC3t15161H Brassica oleracea HOM05D000610 ORTHO05D004774 4.9e-61 239.2 286 51.7
A03p23380 Brassica napus HOM05D000610 ORTHO05D004774 1.1e-60 238.0 286 51.4
BraA03t11555Z Brassica rapa HOM05D000610 ORTHO05D004774 1.1e-60 238.0 286 51.4
unitig_8.g3505 Utricularia gibba HOM05D000610 ORTHO05D004774 1.9e-52 210.7 146 72.6
Peaxi162Scf00130g00325 Petunia axillaris HOM05D000610 ORTHO05D004774 4.7e-48 196.1 300 44.3
SMO266G0031 Selaginella moellendorffii HOM05D000610 ORTHO05D004774 1.1e-47 194.9 300 41.3
HPP92_019441 Vanilla planifolia HOM05D005572 ORTHO05D007494 7.5e-46 188.7 156 62.8
HanXRQChr10g0296791 Helianthus annuus HOM05D000610 ORTHO05D004774 2.4e-36 157.1 109 73.4
Cpa.g.sc224.7 Carica papaya HOM05D000610 ORTHO05D004774 1.2e-35 154.8 98 82.7
Cpa.g.sc224.8 Carica papaya HOM05D000610 ORTHO05D004774 2.1e-19 100.9 82 64.6
Psat6g040440 Pisum sativum HOM05D000610 ORTHO05D004774 3.5e-19 100.1 61 82.0
Lju124C43G3 Lonicera japonica HOM05D000610 ORTHO05D004774 3.4e-14 83.6 46 89.1
unitig_8.g3504 Utricularia gibba HOM05D000610 ORTHO05D004774 6.4e-13 79.3 46 82.6
Hund24700 Selenicereus undatus HOM05D000610 ORTHO05D004774 1.2e-11 75.1 53 67.9
CBR_g38217 Chara braunii HOM05D000610 ORTHO05D004774 1.3e-10 71.6 157 33.1
Pp3c5_21220 Physcomitrium patens HOM05D000610 ORTHO05D004774 6.7e-10 69.3 150 30.7
MCO14G501 Micromonas commoda HOM05D000610 ORTHO05D004774 2.1e-08 64.3 149 31.5
Mapoly0049s0026 Marchantia polymorpha HOM05D000610 ORTHO05D004774 2.8e-08 63.9 149 32.2
HanXRQChr17g0557931 Helianthus annuus HOM05D039366 ORTHO05D004774 8.1e-08 62.4 87 44.8


User provided reference genes

Program Settings