Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 5.4e-105 384.4 205 100.0
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 1.5e-91 339.7 195 90.3
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 9.9e-91 337.0 195 93.3
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 8.4e-90 334.0 197 90.9
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 4.8e-77 291.6 166 79.5
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 7.6e-75 284.3 165 78.2
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 2.9e-74 282.3 168 75.0
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 2.9e-74 282.3 168 75.6
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 3.8e-74 282.0 166 75.3
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.1e-73 280.4 159 78.6
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.9e-73 279.6 160 77.5
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 1.9e-73 279.6 166 77.1
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 4.2e-73 278.5 163 76.1
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 7.1e-73 277.7 166 76.5
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 9.3e-73 277.3 166 75.9
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 9.3e-73 277.3 160 76.9
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.7e-72 275.8 165 76.4
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 3.5e-72 275.4 167 74.3
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 6.0e-72 274.6 160 75.6
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.0e-71 273.9 161 75.8
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.0e-71 273.9 161 75.8
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.0e-71 273.9 161 75.8
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 3.0e-71 272.3 160 78.8
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 5.1e-71 271.6 167 73.1
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 1.5e-70 270.0 172 71.5
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 1.5e-70 270.0 167 73.7
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.9e-70 269.6 166 74.7
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.5e-70 269.2 167 73.1
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 4.3e-70 268.5 158 75.3
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 5.6e-70 268.1 166 75.3
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 7.4e-70 267.7 167 74.9
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 7.4e-70 267.7 167 72.5
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 1.3e-69 266.9 166 73.5
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 2.1e-69 266.2 159 75.5
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 2.8e-69 265.8 167 75.4
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 2.8e-69 265.8 156 76.9
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 4.8e-69 265.0 169 73.4
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 8.1e-69 264.2 161 77.0
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 8.1e-69 264.2 165 75.2
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 1.1e-68 263.8 171 70.2
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 1.8e-68 263.1 169 71.0
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 1.8e-68 263.1 166 71.7
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 1.8e-68 263.1 168 70.2
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 5.3e-68 261.5 159 74.8
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 1.5e-67 260.0 166 70.5
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.5e-67 260.0 170 71.2
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.5e-67 260.0 172 70.9
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.0e-67 259.6 160 76.2
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 2.0e-67 259.6 160 76.2
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 2.6e-67 259.2 166 71.1
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 4.5e-67 258.5 160 75.6
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 5.8e-67 258.1 166 69.9
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.7e-66 256.5 166 68.7
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 1.7e-66 256.5 166 68.1
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 1.7e-66 256.5 166 68.1
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.2e-66 256.1 166 70.5
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 2.2e-66 256.1 200 62.5
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.8e-66 255.4 166 70.5
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 3.8e-66 255.4 187 73.8
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 6.5e-66 254.6 171 69.0
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 1.1e-65 253.8 169 71.0
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.1e-65 253.8 161 73.3
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 2.5e-65 252.7 164 72.6
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 3.2e-65 252.3 163 71.2
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 3.2e-65 252.3 166 67.5
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 4.2e-65 251.9 170 70.6
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 5.5e-65 251.5 173 70.5
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 5.5e-65 251.5 178 66.9
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 7.1e-65 251.1 167 68.3
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 7.1e-65 251.1 170 65.9
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 9.3e-65 250.8 162 73.5
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 9.3e-65 250.8 157 72.6
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 9.3e-65 250.8 165 67.9
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.6e-64 250.0 200 61.0
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 3.5e-64 248.8 173 68.8
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 3.5e-64 248.8 195 61.0
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 4.6e-64 248.4 158 70.9
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 4.6e-64 248.4 162 72.8
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 6.0e-64 248.1 164 69.5
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 6.0e-64 248.1 254 50.8
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 1.3e-63 246.9 174 69.5
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 2.3e-63 246.1 166 69.9
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.3e-63 246.1 160 70.6
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 2.3e-63 246.1 169 66.9
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 3.0e-63 245.7 162 69.8
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 3.0e-63 245.7 156 70.5
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 5.1e-63 245.0 160 70.0
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 5.1e-63 245.0 168 67.3
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 5.1e-63 245.0 164 68.9
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 5.1e-63 245.0 157 72.0
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 5.1e-63 245.0 157 72.0
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 6.7e-63 244.6 161 72.0
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 6.7e-63 244.6 166 69.3
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 6.7e-63 244.6 167 68.3
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 1.1e-62 243.8 174 66.7
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.5e-62 243.4 176 67.0
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 1.5e-62 243.4 157 70.1
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 1.5e-62 243.4 172 67.4
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.9e-62 243.0 160 70.0
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 3.3e-62 242.3 168 66.7
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 3.3e-62 242.3 156 68.6
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 4.3e-62 241.9 206 61.7
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 5.7e-62 241.5 152 73.0
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 7.4e-62 241.1 186 63.4
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.3e-61 240.4 160 69.4
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 2.1e-61 239.6 151 76.2
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 4.8e-61 238.4 196 58.2
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 6.3e-61 238.0 165 65.5
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 4.1e-60 235.3 164 65.9
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 4.1e-60 235.3 167 63.5
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 4.1e-60 235.3 172 64.5
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 5.3e-60 235.0 164 65.9
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 9.0e-60 234.2 164 66.5
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 1.2e-59 233.8 164 66.5
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 1.5e-59 233.4 159 66.0
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 2.6e-59 232.6 161 66.5
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 4.5e-59 231.9 161 66.5
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 7.6e-59 231.1 164 63.4
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 1.7e-58 229.9 161 65.2
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 6.5e-58 228.0 160 65.6
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 8.5e-58 227.6 170 64.1
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 1.1e-57 227.3 161 65.2
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 1.4e-57 226.9 164 62.2
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 4.2e-57 225.3 164 61.6
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 5.5e-57 224.9 161 64.0
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 5.5e-57 224.9 161 64.0
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 5.5e-57 224.9 161 64.0
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 3.9e-55 218.8 136 72.1
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 4.3e-54 215.3 119 80.7
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.4e-49 200.3 147 60.5
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 3.9e-47 192.2 157 54.1
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 2.6e-46 189.5 171 56.7
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 3.7e-45 185.7 160 55.6
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.2e-43 180.6 115 69.6
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 1.2e-35 154.1 166 47.6
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 2.7e-32 142.9 82 79.3
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 4.7e-32 142.1 171 41.5
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 1.9e-25 120.2 73 72.6
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 3.2e-25 119.4 71 73.2
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 8.3e-21 104.8 81 59.3
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 2.8e-13 79.7 175 29.1
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 6.3e-13 78.6 49 67.3
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 6.3e-13 78.6 49 67.3
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 2.0e-11 73.6 48 64.6
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 3.5e-11 72.8 43 72.1
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 1.1e-09 67.8 47 68.1
Pp3c6_20370 Physcomitrium patens HOM05D004337 ORTHO05D043897 6.8e-07 58.5 45 55.6


User provided reference genes

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