Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 2.2e-58 228.8 118 100.0
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 7.8e-48 193.7 104 92.3
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 8.6e-47 190.3 104 90.4
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 1.3e-39 166.4 104 80.8
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 1.2e-29 133.3 105 61.0
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 2.1e-29 132.5 100 61.0
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 2.1e-29 132.5 102 59.8
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 1.1e-28 130.2 104 59.6
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 1.8e-28 129.4 104 59.6
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 4.0e-28 128.3 105 59.0
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 1.3e-26 123.2 104 56.7
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 2.9e-26 122.1 104 55.8
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 3.8e-26 121.7 103 60.2
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 4.9e-26 121.3 107 54.2
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 6.4e-26 120.9 102 58.8
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 8.4e-26 120.6 105 56.2
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 8.4e-26 120.6 104 53.8
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 8.4e-26 120.6 103 53.4
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 4.2e-25 118.2 109 55.0
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 7.1e-25 117.5 104 52.9
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 9.3e-25 117.1 105 58.1
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 2.1e-24 115.9 102 55.9
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 2.1e-24 115.9 101 56.4
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 4.6e-24 114.8 102 54.9
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 7.8e-24 114.0 104 57.7
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.0e-23 113.6 105 54.3
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 1.0e-23 113.6 98 58.2
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 1.0e-23 113.6 103 52.4
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 1.7e-23 112.8 103 50.5
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 2.3e-23 112.5 107 54.2
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 3.0e-23 112.1 108 51.9
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 3.0e-23 112.1 103 53.4
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 3.0e-23 112.1 103 50.5
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 6.6e-23 110.9 112 49.1
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 6.6e-23 110.9 103 56.3
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 6.6e-23 110.9 103 56.3
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 6.6e-23 110.9 103 56.3
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 8.7e-23 110.5 103 50.5
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 8.7e-23 110.5 105 54.3
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 8.7e-23 110.5 107 51.4
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 1.5e-22 109.8 103 49.5
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.9e-22 109.4 103 55.3
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 1.9e-22 109.4 102 53.9
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 2.5e-22 109.0 105 51.4
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 3.3e-22 108.6 102 50.0
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 4.3e-22 108.2 105 54.3
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 5.6e-22 107.8 104 51.9
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 5.6e-22 107.8 106 43.4
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 7.3e-22 107.5 90 56.7
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 7.3e-22 107.5 90 56.7
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 7.3e-22 107.5 112 47.3
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 9.6e-22 107.1 104 51.9
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 2.8e-21 105.5 108 50.0
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 3.6e-21 105.1 114 46.5
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 3.6e-21 105.1 114 46.5
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 3.6e-21 105.1 114 45.6
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 6.2e-21 104.4 103 52.4
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 6.2e-21 104.4 103 52.4
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 6.2e-21 104.4 103 52.4
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 8.1e-21 104.0 107 52.3
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 8.1e-21 104.0 112 50.9
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 8.1e-21 104.0 98 54.1
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 2.4e-20 102.4 103 49.5
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.4e-20 102.4 114 44.7
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.4e-20 102.4 119 44.5
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 3.1e-20 102.1 105 51.4
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 3.1e-20 102.1 116 44.8
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 6.9e-20 100.9 103 47.6
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 6.9e-20 100.9 116 44.0
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.2e-19 100.1 95 48.4
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 2.0e-19 99.4 105 49.5
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 2.6e-19 99.0 100 51.0
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 2.6e-19 99.0 84 57.1
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 3.4e-19 98.6 106 50.0
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 7.6e-19 97.4 105 48.6
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 2.9e-18 95.5 102 47.1
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 3.8e-18 95.1 85 57.6
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 3.2e-17 92.0 102 52.9
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 5.4e-17 91.3 84 53.6
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 7.1e-17 90.9 98 48.0
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 9.3e-17 90.5 125 43.2
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 6.0e-16 87.8 117 46.2
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 1.3e-15 86.7 158 35.4
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 2.3e-15 85.9 85 52.9
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 1.1e-14 83.6 91 49.5
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 1.5e-14 83.2 76 57.9
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 2.8e-13 79.0 102 47.1
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.8e-12 76.3 69 52.2
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 5.3e-12 74.7 114 40.4
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 2.6e-11 72.4 100 42.0
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 2.6e-11 72.4 100 42.0
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 5.8e-11 71.2 113 40.7
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 1.6e-08 63.2 61 45.9
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 3.5e-08 62.0 86 39.5
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 5.1e-07 58.2 93 38.7


User provided reference genes

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