Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G002310 Citrullus lanatus HOM05D006621 ORTHO05D008425 2.9e-310 1067.8 558 100.0
CsaV3_4G030430 Cucumis sativus L. HOM05D006621 ORTHO05D008425 6.5e-294 1013.4 558 94.3
MELO3C008903.2 Cucumis melo HOM05D006621 ORTHO05D008425 2.5e-285 984.9 558 92.3
Sed0013147 Sechium edule HOM05D006621 ORTHO05D008425 1.1e-280 969.5 558 90.1
MD14G1060600 Malus domestica HOM05D006621 ORTHO05D008425 1.3e-225 786.6 561 74.2
RcHm_v2.0_Chr3g0480241 Rosa chinensis HOM05D006621 ORTHO05D008425 2.9e-225 785.4 562 74.7
QL07p023160 Quercus lobata HOM05D006621 ORTHO05D008425 4.1e-224 781.6 570 72.6
Cfa016900 Carpinus fangiana HOM05D006621 ORTHO05D008425 3.9e-222 775.0 558 73.5
FAN02G3731 Fragaria x ananassa HOM05D006621 ORTHO05D008425 2.8e-220 768.8 560 73.0
Manes.09G032200 Manihot esculenta HOM05D006621 ORTHO05D008425 4.7e-220 768.1 571 71.3
Ciclev10011385m.g Citrus clementina HOM05D006621 ORTHO05D008425 6.2e-220 767.7 565 71.9
FvH4_6g22670 Fragaria vesca HOM05D006621 ORTHO05D008425 1.1e-219 766.9 560 72.9
FAN09G2006 Fragaria x ananassa HOM05D006621 ORTHO05D008425 1.8e-219 766.1 560 73.0
Haze_19963 Corylus avellana HOM05D006621 ORTHO05D008425 5.8e-218 761.1 553 73.1
FAN05G4150 Fragaria x ananassa HOM05D006621 ORTHO05D008425 9.9e-218 760.4 560 72.7
CiPaw.09G032000 Carya illinoinensis HOM05D006621 ORTHO05D008425 1.3e-217 760.0 570 71.6
PGR142G0547 Punica granatum HOM05D006621 ORTHO05D008425 1.3e-217 760.0 567 71.3
FAN14G1344 Fragaria x ananassa HOM05D006621 ORTHO05D008425 3.7e-217 758.4 575 71.1
COL.COLO4_36135 Corchorus olitorius HOM05D006621 ORTHO05D008425 1.4e-216 756.5 571 71.1
Glyma.02G176900 Glycine max HOM05D006621 ORTHO05D008425 2.4e-216 755.7 564 70.0
Thecc.05G168600 Theobroma cacao HOM05D006621 ORTHO05D008425 3.2e-216 755.4 571 70.9
Eucgr.K01826 Eucalyptus grandis HOM05D006621 ORTHO05D008425 6.0e-215 751.1 559 71.9
Dinv24092 Davidia involucrata HOM05D006621 ORTHO05D008425 7.8e-215 750.7 572 71.3
CANSAT64G2439 Cannabis sativa HOM05D006621 ORTHO05D008425 1.0e-214 750.4 564 71.8
CSS0004967 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D008425 6.6e-214 747.7 573 70.0
Gohir.D09G123264 Gossypium hirsutum HOM05D006621 ORTHO05D008425 1.2e-212 743.4 567 70.4
Ca_26117_v3 Cicer arietinum L. HOM05D006621 ORTHO05D008425 4.7e-212 741.5 565 69.9
Gorai.006G141700 Gossypium raimondii HOM05D006621 ORTHO05D008425 4.7e-212 741.5 567 70.2
Duzib128G0108 Durio zibethinus HOM05D006621 ORTHO05D008425 2.4e-211 739.2 573 69.3
arahy.Tifrunner.gnm1.ann1.G78CS5 Arachis hypogaea HOM05D006621 ORTHO05D008425 3.1e-211 738.8 562 69.6
GSVIVG01033523001 Vitis vinifera HOM05D006621 ORTHO05D008425 3.1e-211 738.8 562 69.9
Atru.chr8.1052 Acer truncatum HOM05D006621 ORTHO05D008425 4.0e-211 738.4 571 68.1
Cc00_g14610 Coffea canephora HOM05D006621 ORTHO05D008425 4.0e-211 738.4 568 69.9
FAN14G0291 Fragaria x ananassa HOM05D006621 ORTHO05D008425 8.9e-211 737.3 560 70.9
TPR.G24898 Trifolium pratense HOM05D006621 ORTHO05D008425 1.2e-210 736.9 564 68.6
Gohir.A09G126800 Gossypium hirsutum HOM05D006621 ORTHO05D008425 1.3e-209 733.4 568 69.4
Nitab4.5_0000016g0290 Nicotiana tabacum HOM05D006621 ORTHO05D008425 8.4e-209 730.7 567 69.0
Lj5g0023768 Lotus japonicus HOM05D006621 ORTHO05D008425 2.4e-208 729.2 565 68.1
Glyma.10G091600 Glycine max HOM05D006621 ORTHO05D008425 7.1e-208 727.6 564 69.0
Potri.006G059500 Populus trichocarpa HOM05D006621 ORTHO05D008425 2.7e-207 725.7 571 68.0
TWI74G0211 Tripterygium wilfordii HOM05D006621 ORTHO05D008425 3.5e-207 725.3 560 68.9
Medtr1g053520 Medicago truncatula HOM05D006621 ORTHO05D008425 2.3e-206 722.6 565 68.0
THA.LOC104799308 Tarenaya hassleriana HOM05D006621 ORTHO05D008425 2.3e-206 722.6 569 67.8
Phvul.007G257900 Phaseolus vulgaris HOM05D006621 ORTHO05D008425 6.6e-206 721.1 561 68.3
VMungo0720G2363 Vigna mungo HOM05D006621 ORTHO05D008425 1.9e-205 719.5 562 67.8
Nn1g01946 Nelumbo nucifera HOM05D006621 ORTHO05D008425 2.5e-205 719.2 567 67.7
Lju124A29T46 Lonicera japonica HOM05D006621 ORTHO05D008425 3.3e-205 718.8 563 68.4
Lalb_Chr21g0317041 Lupinus albus HOM05D006621 ORTHO05D008425 2.8e-204 715.7 565 67.4
Rhsim04G0097900 Rhododendron simsii HOM05D006621 ORTHO05D008425 9.0e-203 710.7 595 65.2
MSTRG.6466 Avicennia marina HOM05D006621 ORTHO05D008425 1.5e-202 709.9 572 67.8
Hma1.2p1_0005F.1_g004290 Hydrangea macrophylla HOM05D006621 ORTHO05D008425 1.5e-202 709.9 570 67.9
CAN.G691.11 Capsicum annuum HOM05D006621 ORTHO05D008425 2.6e-202 709.1 563 67.3
Sopen03g013060 Solanum pennellii HOM05D006621 ORTHO05D008425 3.4e-202 708.8 562 66.5
Actinidia38574 Actinidia chinensis HOM05D006621 ORTHO05D008425 1.3e-201 706.8 572 67.3
arahy.Tifrunner.gnm1.ann1.ZJT11U Arachis hypogaea HOM05D006621 ORTHO05D008425 5.4e-200 701.4 634 61.4
Sabra06G0042800 Salix brachista HOM05D006621 ORTHO05D008425 5.4e-200 701.4 576 66.1
Hund19192 Selenicereus undatus HOM05D006621 ORTHO05D008425 9.3e-200 700.7 586 64.2
PSO339G6474 Papaver somniferum HOM05D006621 ORTHO05D008425 1.2e-199 700.3 569 64.3
EL10Ac3g06943 Beta vulgaris HOM05D006621 ORTHO05D008425 1.9e-197 693.0 560 66.8
BcaC06g32538 Brassica carinata HOM05D006621 ORTHO05D008425 2.5e-197 692.6 560 66.8
Ah.13g076080 Amaranthus hybridus HOM05D006621 ORTHO05D008425 1.3e-196 690.3 564 64.9
PSO384G1846 Papaver somniferum HOM05D006621 ORTHO05D008425 2.1e-196 689.5 569 63.8
HanXRQChr01g0009671 Helianthus annuus HOM05D006621 ORTHO05D008425 3.6e-196 688.7 556 65.6
Migut.J01819 Erythranthe guttata HOM05D006621 ORTHO05D008425 8.1e-196 687.6 563 66.8
Sp6g36030 Schrenkiella parvula HOM05D006621 ORTHO05D008425 8.1e-196 687.6 561 65.8
CARHR206340 Cardamine hirsuta HOM05D006621 ORTHO05D008425 1.4e-195 686.8 561 65.6
Sc13g0002140 Simmondsia chinensis HOM05D006621 ORTHO05D008425 3.1e-195 685.6 571 66.7
Aa31LG11G7690 Aethionema arabicum HOM05D006621 ORTHO05D008425 9.0e-195 684.1 559 65.8
Thhalv10013160m.g Eutrema salsugineum HOM05D006621 ORTHO05D008425 1.7e-193 679.9 561 65.2
Oeu008113.1 Olea europaea HOM05D006621 ORTHO05D008425 1.7e-193 679.9 568 66.2
AT5G06830 Arabidopsis thaliana HOM05D006621 ORTHO05D008425 2.9e-193 679.1 561 65.1
ECA248G1459 Erigeron canadensis HOM05D006621 ORTHO05D008425 4.9e-193 678.3 558 65.9
Carub.0006s0572 Capsella rubella HOM05D006621 ORTHO05D008425 8.4e-193 677.6 559 65.1
Prupe.7G073900 Prunus persica HOM05D006621 ORTHO05D008425 1.2e-191 673.7 557 67.0
AL6G16950 Arabidopsis lyrata HOM05D006621 ORTHO05D008425 6.0e-191 671.4 559 64.8
Lsat_1_v5_gn_5_164180 Lactuca sativa HOM05D006621 ORTHO05D008425 7.9e-191 671.0 554 65.3
Aqoxy1G00197 Aquilegia oxysepala HOM05D006621 ORTHO05D008425 1.9e-189 666.4 570 62.5
SalBow6G6334 Salvia bowleyana HOM05D006621 ORTHO05D008425 4.2e-184 648.7 571 63.0
BcaC06g32399 Brassica carinata HOM05D006621 ORTHO05D008425 2.3e-182 642.9 560 63.0
BolC9t59734H Brassica oleracea HOM05D006621 ORTHO05D008425 2.3e-182 642.9 560 63.0
C09p69910 Brassica napus HOM05D006621 ORTHO05D008425 6.7e-182 641.3 560 62.9
Nitab4.5_0003572g0080 Nicotiana tabacum HOM05D006621 ORTHO05D008425 1.1e-181 640.6 564 62.4
A10p29540 Brassica napus HOM05D006621 ORTHO05D008425 1.5e-181 640.2 560 63.0
BraA10t44997Z Brassica rapa HOM05D006621 ORTHO05D008425 1.5e-181 640.2 560 63.0
vmacro09106 Vaccinium macrocarpon HOM05D006621 ORTHO05D008425 4.5e-178 628.6 529 66.2
AUR62012064 Chenopodium quinoa HOM05D006621 ORTHO05D008425 3.8e-177 625.5 527 63.0
AUR62024325 Chenopodium quinoa HOM05D006621 ORTHO05D008425 8.4e-177 624.4 568 60.2
Os06g0320100 Oryza sativa ssp. japonica HOM05D006621 ORTHO05D008425 2.5e-176 622.9 565 59.3
HPP92_015468 Vanilla planifolia HOM05D006621 ORTHO05D008425 2.1e-175 619.8 579 57.7
ATR0605G120 Amborella trichopoda HOM05D006621 ORTHO05D008425 6.1e-175 618.2 569 59.2
CDE10G0898 Ceratophyllum demersum HOM05D006621 ORTHO05D008425 1.1e-171 607.4 568 58.1
Peaxi162Scf00258g00117 Petunia axillaris HOM05D006621 ORTHO05D008425 7.7e-170 601.3 482 66.8
Zm00001eb381660 Zea mays HOM05D006621 ORTHO05D008425 1.8e-166 590.1 631 53.7
Psat6g126120 Pisum sativum HOM05D006621 ORTHO05D008425 3.1e-163 579.3 478 64.0
unitig_27.g25079 Utricularia gibba HOM05D006621 ORTHO05D008425 2.8e-156 556.2 516 59.7
Cpa.g.sc85.87 Carica papaya HOM05D006621 ORTHO05D008425 1.8e-142 510.4 404 66.1
Zm00001eb381720 Zea mays HOM05D006621 ORTHO05D008425 1.8e-123 447.2 446 57.4
Mapoly0080s0041 Marchantia polymorpha HOM05D006621 ORTHO05D008425 6.2e-119 432.2 574 42.2
Eucgr.D02420 Eucalyptus grandis HOM05D006621 ORTHO05D008425 6.8e-118 428.7 403 62.0
AagrBONN_evm.TU.Sc2ySwM_228.2467 Anthoceros agrestis HOM05D006621 ORTHO05D008425 2.5e-112 410.2 562 43.2
Pp3c23_21740 Physcomitrium patens HOM05D006621 ORTHO05D008425 6.6e-105 385.6 588 40.0
MD12G1060300 Malus domestica HOM05D006621 ORTHO05D008425 1.3e-97 361.3 224 79.0
TAR636G2274 Trochodendron aralioides HOM05D006621 ORTHO05D008425 1.2e-95 354.8 308 65.3
TAR636G0143 Trochodendron aralioides HOM05D006621 ORTHO05D008425 8.1e-95 352.1 235 76.6
Solyc03g059030.4 Solanum lycopersicum HOM05D006621 ORTHO05D008425 5.8e-93 345.9 306 62.4
SMO134G0088 Selaginella moellendorffii HOM05D006621 ORTHO05D008425 3.8e-92 343.2 554 38.4
CBR_g3749 Chara braunii HOM05D006621 ORTHO05D008425 1.9e-91 340.9 587 36.5
MD12G1060400 Malus domestica HOM05D006621 ORTHO05D008425 1.2e-85 321.6 252 72.6
DCAR_019796 Daucus carota HOM05D006621 ORTHO05D008425 6.7e-73 279.3 261 58.6
SEGI_27578 Sequoiadendron giganteum HOM05D006621 ORTHO05D008425 3.2e-67 260.4 174 71.8
Lsat_1_v5_gn_1_107121 Lactuca sativa HOM05D006621 ORTHO05D008425 2.6e-61 240.7 378 46.0
CAN.G654.6 Capsicum annuum HOM05D006621 ORTHO05D008425 2.9e-52 210.7 151 73.5
Cre01.g047229 Chlamydomonas reinhardtii HOM05D006621 ORTHO05D008425 2.7e-50 204.1 578 29.2
Oeu033745.1 Olea europaea HOM05D006621 ORTHO05D008425 1.1e-48 198.7 214 55.1
RcHm_v2.0_Chr3g0476251 Rosa chinensis HOM05D006621 ORTHO05D008425 1.3e-36 158.7 157 63.7
Lsat_1_v5_gn_5_170341 Lactuca sativa HOM05D006621 ORTHO05D008425 6.7e-33 146.4 150 54.0
FAN02G0678 Fragaria x ananassa HOM05D006621 ORTHO05D008425 6.1e-26 123.2 71 80.3
CSS0033542 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D043305 1.1e-11 75.9 56 76.8
THA.LOC104799305 Tarenaya hassleriana HOM05D006621 ORTHO05D008425 2.0e-08 65.1 62 53.2
DCAR_028612 Daucus carota HOM05D006621 ORTHO05D008425 5.7e-08 63.5 37 78.4
RcHm_v2.0_Chr3g0480231 Rosa chinensis HOM05D006621 ORTHO05D043305 7.0e-06 56.6 42 73.8


User provided reference genes

Program Settings