Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 8.4e-285 983.0 500 100.0
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 9.0e-263 909.8 500 91.0
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 5.1e-258 894.0 500 89.0
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 3.6e-235 818.1 475 87.2
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.4e-194 683.3 507 71.2
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 9.2e-191 670.6 472 72.7
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 1.9e-188 662.9 495 70.1
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 8.1e-187 657.5 490 70.0
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.2e-185 653.7 471 71.5
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.3e-184 650.2 490 69.2
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.3e-184 650.2 491 69.2
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.9e-184 649.0 465 71.4
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 2.9e-184 649.0 491 68.6
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 4.9e-184 648.3 472 69.9
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.2e-182 643.7 468 70.5
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 2.7e-182 642.5 495 67.5
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.7e-182 642.5 496 67.5
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 4.6e-182 641.7 490 67.8
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.1e-180 637.1 500 65.2
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 2.5e-180 636.0 502 66.3
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 3.6e-179 632.1 480 67.9
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 3.6e-179 632.1 501 66.3
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 6.2e-179 631.3 494 66.0
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 8.1e-179 630.9 513 64.7
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.8e-178 629.8 501 65.9
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 1.8e-178 629.8 496 66.5
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 2.4e-178 629.4 508 64.6
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.2e-177 627.1 495 65.9
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 2.0e-177 626.3 491 66.4
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 2.0e-177 626.3 502 64.5
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 4.4e-177 625.2 481 66.5
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 5.8e-177 624.8 521 64.1
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 9.9e-177 624.0 470 68.1
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 9.9e-177 624.0 471 66.2
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.3e-176 623.6 494 65.0
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.7e-176 623.2 515 64.5
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.7e-176 623.2 453 69.5
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 4.9e-176 621.7 494 64.4
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 4.9e-176 621.7 494 64.4
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 6.4e-176 621.3 508 64.6
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 3.2e-175 619.0 529 62.2
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.2e-175 619.0 494 64.4
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 4.2e-175 618.6 508 64.0
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.2e-174 617.1 473 67.2
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.6e-174 616.7 494 64.0
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.6e-174 616.7 494 64.2
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 3.5e-174 615.5 484 65.1
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.6e-174 615.1 508 64.6
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 3.9e-173 612.1 489 65.8
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 6.6e-173 611.3 474 66.0
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 8.7e-173 610.9 497 63.8
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 1.1e-172 610.5 530 61.3
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.5e-172 610.1 495 64.6
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 3.3e-172 609.0 495 63.2
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 4.3e-172 608.6 495 63.4
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 1.2e-171 607.1 468 68.2
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.2e-171 607.1 490 62.7
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 1.6e-171 606.7 477 66.5
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 6.2e-171 604.7 477 65.6
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 1.1e-170 604.0 474 65.0
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 2.4e-170 602.8 474 64.8
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 2.4e-170 602.8 474 64.8
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 5.3e-170 601.7 468 66.2
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 6.9e-170 601.3 476 66.2
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 6.9e-170 601.3 473 66.6
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 6.9e-170 601.3 495 63.4
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 9.0e-170 600.9 474 65.0
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 9.0e-170 600.9 474 65.0
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 3.4e-169 599.0 493 63.3
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 5.8e-169 598.2 503 63.2
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 9.9e-169 597.4 467 66.0
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 3.2e-167 592.4 504 61.9
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.2e-167 592.4 504 61.1
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 4.2e-167 592.0 490 63.3
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 5.4e-167 591.7 474 64.3
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.2e-166 590.5 497 61.6
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 2.1e-166 589.7 498 61.8
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 3.5e-166 589.0 447 66.9
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 6.0e-166 588.2 494 62.8
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.1e-164 583.9 426 69.5
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.5e-164 582.8 470 66.0
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 1.2e-161 573.9 450 64.4
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 2.0e-161 573.2 471 63.1
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 9.3e-159 564.3 513 57.9
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 2.8e-155 552.7 493 60.9
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 3.7e-155 552.4 474 62.7
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 4.8e-155 552.0 507 58.0
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 8.1e-155 551.2 453 62.7
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 4.2e-151 538.9 560 54.3
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 9.3e-151 537.7 539 54.9
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.3e-148 528.9 497 57.9
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.8e-147 526.2 465 60.2
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 5.3e-146 521.9 398 65.3
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.0e-144 517.7 398 65.3
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 7.1e-143 511.5 398 65.8
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 6.1e-142 508.4 500 54.4
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 1.3e-141 507.3 485 56.7
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.9e-136 489.6 396 64.9
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.2e-135 485.7 470 58.5
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 7.2e-127 458.4 405 59.0
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 2.7e-126 456.4 490 54.5
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 1.3e-120 437.6 358 63.4
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 3.8e-120 436.0 462 52.2
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 1.8e-117 427.2 442 51.1
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 6.3e-107 392.1 268 72.0
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.7e-96 357.5 229 76.4
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.4e-90 337.8 261 64.8
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.4e-90 337.8 261 64.8
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 1.7e-88 330.9 269 64.3
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 4.3e-87 326.2 296 62.2
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 9.8e-84 315.1 220 70.9
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 9.8e-84 315.1 200 76.0
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 6.0e-81 305.8 351 48.1
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 1.2e-76 291.6 321 48.6
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.3e-72 278.1 302 48.0
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 3.9e-72 276.6 225 64.4
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.6e-71 272.7 220 65.9
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 2.6e-68 263.8 213 64.8
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 3.4e-68 263.5 266 56.4
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 1.3e-67 261.5 201 65.2
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 1.7e-67 261.2 188 68.1
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.2e-66 256.9 226 62.4
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 1.9e-63 247.7 178 70.2
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 4.0e-61 240.0 231 55.4
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 5.8e-52 209.5 164 63.4
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 6.4e-51 206.1 159 65.4
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 8.4e-51 205.7 171 59.6
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 7.9e-41 172.6 429 28.4
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.3e-35 155.2 145 56.6
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-33 148.3 229 44.5
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 7.9e-33 146.0 493 30.0
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.1e-30 137.9 142 50.0
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 5.9e-28 129.8 143 49.0
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.0e-27 129.0 108 63.0
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 4.1e-21 107.1 275 32.4
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 5.3e-21 106.7 55 92.7
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.1e-18 99.0 101 49.5
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 6.7e-16 89.7 61 73.8
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 1.5e-12 78.6 173 34.7
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 3.8e-11 73.9 53 60.4
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 6.5e-11 73.2 156 34.0
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.9e-10 71.6 67 56.7
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 3.6e-09 67.4 73 57.5
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.2e-06 58.2 92 41.3


User provided reference genes

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