Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 1.3e-238 829.3 419 100.0
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 1.8e-126 456.8 291 77.3
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 7.9e-119 431.4 267 80.5
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 7.4e-101 371.7 245 79.6
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 2.7e-71 273.5 312 48.7
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 2.6e-69 266.9 297 46.8
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 1.1e-67 261.5 314 44.9
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 1.8e-67 260.8 270 53.3
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 9.1e-67 258.5 296 48.6
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 1.2e-66 258.1 314 46.8
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 2.0e-66 257.3 255 52.9
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 2.0e-66 257.3 302 45.7
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 3.3e-64 250.0 303 46.2
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 7.2e-64 248.8 246 51.6
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.6e-63 246.5 301 43.2
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 6.1e-63 245.7 322 43.2
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 8.0e-63 245.4 291 46.4
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 1.4e-62 244.6 254 50.4
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 1.8e-62 244.2 301 42.9
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.8e-62 244.2 301 42.9
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.9e-62 241.9 301 42.5
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 8.9e-62 241.9 311 45.3
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.5e-61 241.1 287 47.4
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 4.4e-61 239.6 260 47.3
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 7.5e-61 238.8 225 54.7
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 7.5e-61 238.8 267 48.7
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 7.5e-61 238.8 301 41.9
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 7.5e-61 238.8 301 41.9
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 9.8e-61 238.4 311 44.7
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 4.9e-60 236.1 283 45.9
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.4e-59 234.6 282 47.2
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 1.8e-59 234.2 314 43.0
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 2.4e-59 233.8 291 44.7
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 3.1e-59 233.4 285 45.3
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 3.1e-59 233.4 298 44.3
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 4.1e-59 233.0 294 41.8
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 7.0e-59 232.3 292 45.2
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 9.2e-59 231.9 276 44.2
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 1.2e-58 231.5 276 47.1
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 3.5e-58 229.9 286 43.4
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 4.5e-58 229.6 298 44.3
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 4.5e-58 229.6 233 51.1
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 7.8e-58 228.8 274 44.5
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 1.0e-57 228.4 261 47.9
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.3e-57 228.0 287 44.3
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.3e-57 228.0 320 40.3
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.3e-57 228.0 320 40.3
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.3e-57 228.0 320 40.3
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.7e-57 227.6 328 42.4
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 1.7e-57 227.6 307 43.6
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 6.6e-57 225.7 296 44.3
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 2.5e-56 223.8 244 47.5
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 5.6e-56 222.6 294 43.5
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 5.6e-56 222.6 249 46.2
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 7.3e-56 222.2 251 45.4
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 7.3e-56 222.2 293 43.7
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.5e-56 221.9 258 44.6
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 9.5e-56 221.9 270 45.6
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 9.5e-56 221.9 294 42.5
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 9.5e-56 221.9 278 45.3
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 1.2e-55 221.5 294 42.5
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 2.1e-55 220.7 295 43.4
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 2.8e-55 220.3 309 42.7
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 1.4e-54 218.0 302 44.7
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 3.0e-54 216.9 269 43.1
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 5.2e-54 216.1 257 43.6
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 2.6e-53 213.8 281 43.1
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 2.6e-53 213.8 217 51.6
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 5.8e-53 212.6 277 41.9
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 2.2e-52 210.7 257 45.1
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.3e-52 208.8 262 43.1
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 5.4e-51 206.1 245 43.7
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 5.4e-51 206.1 276 40.2
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 7.8e-50 202.2 242 45.0
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 5.0e-49 199.5 252 43.7
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.1e-48 198.4 245 43.3
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 1.5e-48 198.0 309 40.5
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.5e-48 198.0 244 46.7
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 7.3e-48 195.7 264 40.5
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 1.1e-46 191.8 276 38.8
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.8e-46 191.0 270 41.1
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.3e-46 190.7 272 40.8
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 3.1e-46 190.3 246 41.5
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 4.0e-46 189.9 244 41.8
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 2.0e-45 187.6 274 41.6
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 2.0e-45 187.6 246 42.3
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.0e-45 187.6 223 49.3
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.0e-45 187.6 271 41.0
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-45 187.2 286 39.5
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-45 187.2 271 40.6
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-45 187.2 271 40.6
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.4e-45 186.4 271 40.2
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.4e-45 186.4 271 40.2
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.4e-45 186.4 271 40.2
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 7.5e-45 185.7 280 38.6
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.5e-45 185.7 271 40.2
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-44 184.9 271 40.6
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.4e-44 182.6 272 39.7
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.9e-43 181.0 101 88.1
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.9e-43 181.0 197 52.3
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 3.0e-41 173.7 284 38.4
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 5.0e-41 172.9 269 37.9
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 4.3e-40 169.9 247 41.7
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 7.3e-40 169.1 240 42.1
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 1.6e-39 167.9 172 48.8
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.7e-39 166.4 224 42.9
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 1.1e-38 165.2 241 40.2
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 8.9e-38 162.2 250 43.2
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 1.7e-36 157.9 290 41.0
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 2.2e-36 157.5 251 43.4
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 2.2e-36 157.5 258 40.3
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.7e-36 156.8 221 40.7
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 4.9e-36 156.4 251 42.2
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.4e-35 154.8 250 41.6
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 3.2e-35 153.7 256 40.2
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.1e-35 153.3 191 42.9
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 4.1e-35 153.3 239 39.7
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 7.1e-35 152.5 259 39.8
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.2e-35 152.1 190 43.2
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 1.2e-34 151.8 249 41.4
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.2e-34 151.8 240 40.0
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-34 151.0 195 42.1
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 2.7e-34 150.6 251 41.4
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 1.7e-33 147.9 249 40.2
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 2.3e-33 147.5 263 39.5
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 2.3e-33 147.5 263 39.5
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 8.6e-33 145.6 217 40.1
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.9e-32 144.4 193 43.5
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 5.6e-32 142.9 262 38.5
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 5.6e-32 142.9 262 38.5
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.6e-31 141.4 164 48.2
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 2.1e-31 141.0 262 38.2
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 8.4e-28 129.0 140 46.4
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.7e-26 124.0 249 32.9
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 6.0e-26 122.9 122 54.9
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 1.1e-22 112.1 174 40.2
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 2.4e-22 110.9 208 32.2
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.8e-21 106.3 162 40.7
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.6e-18 96.7 137 41.6
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 3.3e-16 90.5 196 30.6
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 1.2e-13 82.0 200 28.0
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 4.3e-08 63.5 162 30.9
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 4.8e-07 60.1 76 43.4
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 6.9e-06 56.2 76 36.8


User provided reference genes

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