Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.1e-90 336.7 170 100.0
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.2e-70 270.0 149 88.6
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.4e-69 266.5 150 88.7
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 2.9e-64 248.8 133 91.0
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.9e-43 178.3 127 67.7
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.4e-42 176.0 126 68.3
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 4.1e-42 175.3 125 68.0
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.1e-42 175.3 125 68.0
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 5.4e-42 174.9 127 66.9
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 7.0e-42 174.5 124 69.4
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 9.2e-42 174.1 127 64.6
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.2e-41 173.7 126 65.9
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-41 173.7 127 66.1
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-41 173.7 122 68.9
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.6e-41 173.3 127 66.9
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.7e-41 172.6 127 66.9
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 4.6e-41 171.8 127 63.8
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 6.0e-41 171.4 130 63.1
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 7.8e-41 171.0 123 64.2
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 1.0e-40 170.6 130 62.3
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.3e-40 170.2 127 65.4
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.7e-40 169.9 164 55.5
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 2.3e-40 169.5 138 59.4
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 3.9e-40 168.7 128 62.5
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 3.9e-40 168.7 127 63.8
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 5.0e-40 168.3 127 62.2
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 5.0e-40 168.3 137 63.5
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 6.6e-40 167.9 136 59.6
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 6.6e-40 167.9 127 66.1
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 8.6e-40 167.5 126 64.3
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.1e-39 167.2 127 63.8
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.1e-39 167.2 127 63.8
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.1e-39 167.2 127 66.1
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.1e-39 167.2 123 66.7
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 1.9e-39 166.4 130 64.6
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.9e-39 166.4 128 62.5
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.9e-39 166.4 138 62.3
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 1.9e-39 166.4 127 61.4
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.9e-39 166.4 130 61.5
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 1.9e-39 166.4 124 63.7
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.5e-39 166.0 125 61.6
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 3.3e-39 165.6 128 60.2
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 3.3e-39 165.6 128 62.5
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 3.3e-39 165.6 124 63.7
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 4.3e-39 165.2 126 60.3
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 4.3e-39 165.2 123 65.9
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 4.3e-39 165.2 128 64.8
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 4.3e-39 165.2 126 63.5
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 5.6e-39 164.9 122 63.1
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 7.3e-39 164.5 125 65.6
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 9.5e-39 164.1 127 63.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.2e-38 163.7 127 63.0
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 1.2e-38 163.7 125 65.6
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.6e-38 163.3 125 62.4
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.6e-38 163.3 124 63.7
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 2.1e-38 162.9 120 62.5
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.8e-38 162.5 125 64.8
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.8e-38 162.5 126 60.3
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 3.6e-38 162.2 142 58.5
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 4.7e-38 161.8 139 60.4
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 6.2e-38 161.4 127 60.6
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 6.2e-38 161.4 126 61.9
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 8.1e-38 161.0 119 61.3
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 8.1e-38 161.0 120 63.3
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.1e-37 160.6 125 62.4
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.4e-37 160.2 127 59.1
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.4e-37 160.2 123 62.6
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.8e-37 159.8 121 65.3
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.8e-37 159.8 126 61.1
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 2.3e-37 159.5 126 61.1
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 3.1e-37 159.1 126 60.3
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 5.2e-37 158.3 126 60.3
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 5.2e-37 158.3 120 63.3
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 6.8e-37 157.9 125 61.6
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 2.6e-36 156.0 121 60.3
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 4.4e-36 155.2 127 57.5
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 7.5e-36 154.5 123 61.0
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 9.8e-36 154.1 123 60.2
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 9.8e-36 154.1 119 59.7
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.3e-35 153.7 119 60.5
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.3e-35 153.7 118 61.9
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 1.3e-35 153.7 128 57.0
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.3e-35 153.7 128 57.8
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.3e-35 153.7 119 60.5
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.2e-35 152.9 122 59.0
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 2.9e-35 152.5 120 60.0
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 6.4e-35 151.4 119 58.0
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 8.3e-35 151.0 123 56.1
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.1e-34 150.6 131 56.5
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.1e-34 150.6 131 56.5
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.1e-34 150.6 131 56.5
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.1e-34 150.6 120 61.7
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-34 150.6 123 56.9
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.4e-34 150.2 119 59.7
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 4.1e-34 148.7 124 57.3
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 7.1e-34 147.9 119 57.1
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 7.1e-34 147.9 119 59.7
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 7.1e-34 147.9 122 57.4
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 9.2e-34 147.5 120 61.7
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 9.2e-34 147.5 119 58.8
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.6e-33 146.7 120 57.5
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.1e-33 146.4 119 58.8
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 2.1e-33 146.4 123 56.1
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 2.7e-33 146.0 119 57.1
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 3.5e-33 145.6 119 59.7
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 3.5e-33 145.6 121 57.9
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 4.6e-33 145.2 116 58.6
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 6.0e-33 144.8 135 53.3
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 6.0e-33 144.8 119 58.0
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.0e-32 144.1 131 55.0
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.0e-32 144.1 118 56.8
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 1.7e-32 143.3 125 48.8
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 3.0e-32 142.5 118 58.5
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.9e-32 142.1 118 55.9
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 6.6e-32 141.4 125 54.4
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 1.1e-31 140.6 119 58.0
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.1e-31 140.6 120 55.8
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.1e-31 140.6 107 65.4
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.9e-31 139.8 137 48.9
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 1.9e-31 139.8 131 50.4
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.9e-31 139.8 120 57.5
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 2.5e-31 139.4 131 51.9
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 2.5e-31 139.4 131 51.9
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 2.5e-31 139.4 119 57.1
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.3e-31 138.7 129 50.4
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 4.3e-31 138.7 122 58.2
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 5.6e-31 138.3 120 54.2
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 5.6e-31 138.3 120 60.0
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 5.6e-31 138.3 127 52.0
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 5.6e-31 138.3 127 52.0
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 5.6e-31 138.3 123 56.1
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 9.5e-31 137.5 123 54.5
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 9.5e-31 137.5 135 51.9
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.2e-30 137.1 129 50.4
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.2e-30 137.1 120 56.7
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 1.2e-30 137.1 120 55.0
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.2e-30 137.1 108 57.4
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 1.2e-30 137.1 117 56.4
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 2.1e-30 136.3 123 48.8
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.1e-30 136.3 117 57.3
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.1e-30 136.3 119 55.5
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 2.1e-30 136.3 122 54.1
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 3.6e-30 135.6 119 54.6
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 6.2e-30 134.8 121 55.4
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 6.2e-30 134.8 122 55.7
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 6.2e-30 134.8 120 53.3
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 8.1e-30 134.4 123 55.3
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 2.3e-29 132.9 116 56.0
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 3.1e-29 132.5 120 52.5
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 6.8e-29 131.3 108 61.1
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 2.6e-28 129.4 122 50.8
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 1.3e-27 127.1 125 48.8
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 2.1e-25 119.8 120 54.2
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.7e-25 119.4 103 55.3
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.3e-24 117.1 119 45.4
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 3.9e-24 115.5 119 47.9
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 3.9e-24 115.5 134 47.8
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 6.4e-19 98.2 79 60.8
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.4e-18 97.1 62 67.7
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 4.6e-17 92.0 66 65.2
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.9e-15 86.7 122 37.7
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.6e-14 82.4 67 56.7
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 6.2e-14 81.6 55 65.5
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.0e-13 79.0 58 65.5
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.2e-12 77.4 64 59.4
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.2e-12 77.4 81 55.6
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 3.4e-12 75.9 112 34.8
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 7.6e-12 74.7 65 56.9
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 2.9e-11 72.8 71 53.5
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 4.9e-11 72.0 61 57.4
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 5.4e-10 68.6 64 50.0
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 5.4e-10 68.6 64 50.0
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.2e-09 67.4 62 53.2
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.8e-08 63.5 65 55.4
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.3e-06 57.4 59 50.8
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 4.8e-06 55.5 64 37.5


User provided reference genes

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