Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G000900 Citrullus lanatus HOM05D003272 ORTHO05D003776 7.9e-299 1029.6 507 100.0
MELO3C009057.2 Cucumis melo HOM05D003272 ORTHO05D003776 1.0e-261 906.4 471 94.7
CsaV3_4G031310 Cucumis sativus L. HOM05D003272 ORTHO05D003776 2.9e-261 904.8 471 94.7
Sed0015373 Sechium edule HOM05D003272 ORTHO05D003776 7.3e-252 873.6 471 91.5
Sed0015981 Sechium edule HOM05D003272 ORTHO05D003776 1.2e-246 856.3 471 90.7
MD14G1054100 Malus domestica HOM05D003272 ORTHO05D003776 6.0e-222 774.2 472 82.0
Manes.09G037500 Manihot esculenta HOM05D003272 ORTHO05D003776 6.0e-222 774.2 471 82.6
Sabra16G0063100 Salix brachista HOM05D003272 ORTHO05D003776 1.1e-220 770.0 490 79.8
Cfa020144 Carpinus fangiana HOM05D003272 ORTHO05D003776 4.3e-220 768.1 471 81.5
RcHm_v2.0_Chr3g0479241 Rosa chinensis HOM05D003272 ORTHO05D003776 5.6e-220 767.7 472 81.6
Ciclev10010926m.g Citrus clementina HOM05D003272 ORTHO05D003776 1.2e-219 766.5 471 81.7
FvH4_6g21890 Fragaria vesca HOM05D003272 ORTHO05D003776 2.8e-219 765.4 473 81.4
CiPaw.10G025200 Carya illinoinensis HOM05D003272 ORTHO05D003776 6.2e-219 764.2 471 81.5
QL07p024475 Quercus lobata HOM05D003272 ORTHO05D003776 2.4e-218 762.3 472 81.6
Potri.016G060200 Populus trichocarpa HOM05D003272 ORTHO05D003776 1.5e-217 759.6 473 81.4
FAN14G3195 Fragaria x ananassa HOM05D003272 ORTHO05D003776 9.9e-217 756.9 505 77.0
CANSAT64G1991 Cannabis sativa HOM05D003272 ORTHO05D003776 3.8e-216 755.0 472 79.9
FAN05G4520 Fragaria x ananassa HOM05D003272 ORTHO05D003776 3.8e-216 755.0 505 77.0
Thecc.05G174800 Theobroma cacao HOM05D003272 ORTHO05D003776 3.8e-216 755.0 472 81.6
FAN09G3998 Fragaria x ananassa HOM05D003272 ORTHO05D003776 4.9e-216 754.6 505 76.6
Nitab4.5_0002339g0030 Nicotiana tabacum HOM05D003272 ORTHO05D003776 6.4e-216 754.2 472 79.0
COL.COLO4_29357 Corchorus olitorius HOM05D003272 ORTHO05D003776 1.1e-215 753.4 472 81.6
Hund24815 Selenicereus undatus HOM05D003272 ORTHO05D003776 1.4e-215 753.1 521 73.9
Potri.006G194500 Populus trichocarpa HOM05D003272 ORTHO05D003776 2.4e-215 752.3 473 79.9
Atru.chr8.1154 Acer truncatum HOM05D003272 ORTHO05D003776 5.4e-215 751.1 471 80.9
TPR.G30306 Trifolium pratense HOM05D003272 ORTHO05D003776 5.4e-215 751.1 471 80.0
Glyma.19G149800 Glycine max HOM05D003272 ORTHO05D003776 1.6e-214 749.6 472 79.2
Duzib093G2065 Durio zibethinus HOM05D003272 ORTHO05D003776 6.0e-214 747.7 471 80.0
CSS0044868 Camellia sinensis var. sinensis HOM05D003272 ORTHO05D003776 7.8e-214 747.3 480 78.8
arahy.Tifrunner.gnm1.ann1.LQ935E Arachis hypogaea HOM05D003272 ORTHO05D003776 1.0e-213 746.9 475 79.2
arahy.Tifrunner.gnm1.ann1.VD9RJB Arachis hypogaea HOM05D003272 ORTHO05D003776 2.3e-213 745.7 475 78.7
FAN02G4424 Fragaria x ananassa HOM05D003272 ORTHO05D003776 5.1e-213 744.6 530 74.0
Gorai.002G155500 Gossypium raimondii HOM05D003272 ORTHO05D003776 6.6e-213 744.2 471 80.3
GSVIVG01033469001 Vitis vinifera HOM05D003272 ORTHO05D003776 8.7e-213 743.8 480 78.5
Nitab4.5_0000009g0220 Nicotiana tabacum HOM05D003272 ORTHO05D003776 1.5e-212 743.0 506 74.9
Psat0s4022g0120 Pisum sativum HOM05D003272 ORTHO05D003776 4.3e-212 741.5 471 79.2
TWI53G1277 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 4.3e-212 741.5 471 79.6
TWI77G0466 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 4.3e-212 741.5 471 79.6
Dinv24041 Davidia involucrata HOM05D003272 ORTHO05D003776 9.6e-212 740.3 482 77.4
Solyc10g079010.3 Solanum lycopersicum HOM05D003272 ORTHO05D003776 9.6e-212 740.3 477 76.7
TWI74G0429 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 2.1e-211 739.2 471 79.4
AUR62012007 Chenopodium quinoa HOM05D003272 ORTHO05D003776 2.8e-211 738.8 505 73.7
Glyma.03G146500 Glycine max HOM05D003272 ORTHO05D003776 2.8e-211 738.8 473 76.5
Sabra06G0149200 Salix brachista HOM05D003272 ORTHO05D003776 2.8e-211 738.8 474 78.7
Sopen10g029630 Solanum pennellii HOM05D003272 ORTHO05D003776 3.6e-211 738.4 477 76.7
Sc13g0002400 Simmondsia chinensis HOM05D003272 ORTHO05D003776 6.2e-211 737.6 479 77.7
Dinv16344 Davidia involucrata HOM05D003272 ORTHO05D003776 8.1e-211 737.3 481 78.2
DCAR_017040 Daucus carota HOM05D003272 ORTHO05D003776 1.4e-210 736.5 473 77.6
Lalb_Chr04g0259561 Lupinus albus HOM05D003272 ORTHO05D003776 1.4e-210 736.5 471 77.9
Gorai.013G213300 Gossypium raimondii HOM05D003272 ORTHO05D003776 1.8e-210 736.1 472 79.7
Peaxi162Scf00463g00423 Petunia axillaris HOM05D003272 ORTHO05D003776 1.8e-210 736.1 472 78.4
TAR623G1173 Trochodendron aralioides HOM05D003272 ORTHO05D003776 3.1e-210 735.3 487 76.2
THA.LOC104802668 Tarenaya hassleriana HOM05D003272 ORTHO05D003776 9.0e-210 733.8 471 78.3
Glyma.09G109000 Glycine max HOM05D003272 ORTHO05D003776 1.5e-209 733.0 471 78.1
PGR142G2098 Punica granatum HOM05D003272 ORTHO05D003776 1.5e-209 733.0 469 78.9
Lalb_Chr15g0079101 Lupinus albus HOM05D003272 ORTHO05D003776 4.5e-209 731.5 471 77.5
Cpa.g.sc85.47 Carica papaya HOM05D003272 ORTHO05D003776 1.3e-208 729.9 471 79.0
Gohir.A04G054400 Gossypium hirsutum HOM05D003272 ORTHO05D003776 1.3e-208 729.9 472 78.8
Nn7g35964 Nelumbo nucifera HOM05D003272 ORTHO05D003776 1.3e-208 729.9 480 76.2
Actinidia38598 Actinidia chinensis HOM05D003272 ORTHO05D003776 1.7e-208 729.6 471 79.4
Rhsim04G0095400 Rhododendron simsii HOM05D003272 ORTHO05D003776 1.7e-208 729.6 524 73.1
EL10Ac3g06883 Beta vulgaris HOM05D003272 ORTHO05D003776 2.2e-208 729.2 513 73.7
Actinidia17288 Actinidia chinensis HOM05D003272 ORTHO05D003776 2.9e-208 728.8 471 77.7
Phvul.007G261300 Phaseolus vulgaris HOM05D003272 ORTHO05D003776 2.9e-208 728.8 471 78.3
Medtr1g054355 Medicago truncatula HOM05D003272 ORTHO05D003776 4.9e-208 728.0 450 80.9
AUR62015331 Chenopodium quinoa HOM05D003272 ORTHO05D003776 6.4e-208 727.6 480 75.6
Cc06_g15520 Coffea canephora HOM05D003272 ORTHO05D003776 1.9e-207 726.1 500 74.2
Lalb_Chr18g0048041 Lupinus albus HOM05D003272 ORTHO05D003776 4.2e-207 724.9 471 76.6
Gohir.A01G137100 Gossypium hirsutum HOM05D003272 ORTHO05D003776 2.7e-206 722.2 471 78.3
VMungo0720G0611 Vigna mungo HOM05D003272 ORTHO05D003776 2.7e-206 722.2 471 77.5
Gohir.D01G124900 Gossypium hirsutum HOM05D003272 ORTHO05D003776 3.5e-206 721.8 471 78.6
Actinidia22066 Actinidia chinensis HOM05D003272 ORTHO05D003776 2.3e-205 719.2 480 74.4
Phvul.001G144300 Phaseolus vulgaris HOM05D003272 ORTHO05D003776 2.3e-205 719.2 504 73.6
MBI19_g17426_MAGBIO Magnolia biondii HOM05D003272 ORTHO05D003776 3.9e-205 718.4 473 76.5
Rhsim03G0003200 Rhododendron simsii HOM05D003272 ORTHO05D003776 1.1e-204 716.8 512 73.2
CAN.G960.20 Capsicum annuum HOM05D003272 ORTHO05D003776 4.3e-204 714.9 466 76.2
Duzib106G0166 Durio zibethinus HOM05D003272 ORTHO05D003776 7.4e-204 714.1 471 77.3
vmacro22626 Vaccinium macrocarpon HOM05D003272 ORTHO05D003776 7.4e-204 714.1 505 72.7
DCAR_013670 Daucus carota HOM05D003272 ORTHO05D003776 1.6e-203 713.0 461 78.1
Ca_08539_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 2.8e-203 712.2 472 76.3
TPR.G13362 Trifolium pratense HOM05D003272 ORTHO05D003776 2.8e-203 712.2 471 76.0
Nitab4.5_0000358g0060 Nicotiana tabacum HOM05D003272 ORTHO05D003776 4.8e-203 711.4 512 70.1
Lsat_1_v5_gn_1_60961 Lactuca sativa HOM05D003272 ORTHO05D003776 6.2e-203 711.1 476 76.5
Nn2g15739 Nelumbo nucifera HOM05D003272 ORTHO05D003776 6.2e-203 711.1 480 74.6
Aqoxy2G00092 Aquilegia oxysepala HOM05D003272 ORTHO05D003776 1.1e-202 710.3 476 75.2
SalBow6G0671 Salvia bowleyana HOM05D003272 ORTHO05D003776 1.1e-202 710.3 454 78.6
MBI13_g29652_MAGBIO Magnolia biondii HOM05D003272 ORTHO05D003776 1.8e-202 709.5 472 76.5
HanXRQChr14g0438261 Helianthus annuus HOM05D003272 ORTHO05D003776 3.1e-202 708.8 472 75.4
THA.LOC104824482 Tarenaya hassleriana HOM05D003272 ORTHO05D003776 3.1e-202 708.8 472 75.8
Lj1g0008912 Lotus japonicus HOM05D003272 ORTHO05D003776 4.0e-202 708.4 452 78.1
Psat3g067560 Pisum sativum HOM05D003272 ORTHO05D003776 5.3e-202 708.0 452 77.9
Haze_20019 Corylus avellana HOM05D003272 ORTHO05D003776 6.9e-202 707.6 628 61.9
Aa31LG10G12750 Aethionema arabicum HOM05D003272 ORTHO05D003776 3.4e-201 705.3 471 75.6
SalBow1G7043 Salvia bowleyana HOM05D003272 ORTHO05D003776 3.4e-201 705.3 493 70.2
HanXRQChr14g0443181 Helianthus annuus HOM05D003272 ORTHO05D003776 5.8e-201 704.5 453 78.6
Sp5g04670 Schrenkiella parvula HOM05D003272 ORTHO05D003776 2.2e-200 702.6 471 75.6
AL5G39720 Arabidopsis lyrata HOM05D003272 ORTHO05D003776 3.8e-200 701.8 471 75.2
ECA238G2479 Erigeron canadensis HOM05D003272 ORTHO05D003776 1.1e-199 700.3 471 75.4
Migut.J01867 Erythranthe guttata HOM05D003272 ORTHO05D003776 4.6e-198 694.9 452 75.9
MSTRG.6497 Avicennia marina HOM05D003272 ORTHO05D003776 1.3e-197 693.3 453 76.8
Lj1C1133T6 Lonicera japonica HOM05D003272 ORTHO05D003776 1.3e-197 693.3 448 77.9
AT3G58050 Arabidopsis thaliana HOM05D003272 ORTHO05D003776 1.8e-197 693.0 510 69.6
CARHR168370 Cardamine hirsuta HOM05D003272 ORTHO05D003776 1.8e-197 693.0 471 74.3
MSTRG.19926 Avicennia marina HOM05D003272 ORTHO05D003776 3.0e-197 692.2 466 75.1
ATR0598G091 Amborella trichopoda HOM05D003272 ORTHO05D003776 1.5e-196 689.9 474 73.2
Lsat_1_v5_gn_2_56141 Lactuca sativa HOM05D003272 ORTHO05D003776 1.9e-196 689.5 453 76.6
SGA_v2.0_scaffold69G23041 Striga asiatica HOM05D003272 ORTHO05D003776 1.9e-196 689.5 453 76.2
Medtr7g093630 Medicago truncatula HOM05D003272 ORTHO05D003776 7.4e-196 687.6 510 69.8
Eucgr.K01852 Eucalyptus grandis HOM05D003272 ORTHO05D003776 2.1e-195 686.0 478 73.6
Ca_12036_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 4.8e-195 684.9 510 72.0
ECA248G2064 Erigeron canadensis HOM05D003272 ORTHO05D003776 2.4e-194 682.6 472 73.9
vmacro22121 Vaccinium macrocarpon HOM05D003272 ORTHO05D003776 9.0e-194 680.6 604 62.7
Lj2C363G5 Lonicera japonica HOM05D003272 ORTHO05D003776 7.6e-193 677.6 501 69.9
Prupe.7G081000 Prunus persica HOM05D003272 ORTHO05D003776 1.9e-191 672.9 402 84.1
MD12G1054800 Malus domestica HOM05D003272 ORTHO05D003776 9.3e-191 670.6 404 83.2
Ah.04g152770 Amaranthus hybridus HOM05D003272 ORTHO05D003776 1.6e-190 669.8 433 78.3
Peaxi162Scf00003g00473 Petunia axillaris HOM05D003272 ORTHO05D003776 4.8e-187 658.3 506 67.2
SEGI_10284 Sequoiadendron giganteum HOM05D003272 ORTHO05D003776 6.7e-181 637.9 481 68.4
Thhalv10016156m.g Eutrema salsugineum HOM05D003272 ORTHO05D003776 8.8e-181 637.5 471 67.7
PSO339G1267 Papaver somniferum HOM05D003272 ORTHO05D003776 1.1e-180 637.1 480 68.8
PSO384G2805 Papaver somniferum HOM05D003272 ORTHO05D003776 3.3e-180 635.6 480 68.5
Sp4g24230 Schrenkiella parvula HOM05D003272 ORTHO05D003776 3.1e-178 629.0 471 69.6
Aa31LG1G24170 Aethionema arabicum HOM05D003272 ORTHO05D003776 1.0e-176 624.0 474 68.4
CARHR137060 Cardamine hirsuta HOM05D003272 ORTHO05D003776 5.0e-176 621.7 471 67.7
AL4G40320 Arabidopsis lyrata HOM05D003272 ORTHO05D003776 1.0e-173 614.0 472 67.2
Ca_12034_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 3.0e-173 612.5 439 73.3
Zm00001eb399270 Zea mays HOM05D003272 ORTHO05D003776 7.4e-172 607.8 454 65.4
Carub.0004s2429 Capsella rubella HOM05D003272 ORTHO05D003776 3.1e-170 602.4 472 66.5
unitig_0.g524 Utricularia gibba HOM05D003272 ORTHO05D003776 1.5e-169 600.1 505 61.0
Zm00001eb009880 Zea mays HOM05D003272 ORTHO05D003776 1.1e-167 594.0 454 66.7
AT2G41960 Arabidopsis thaliana HOM05D003272 ORTHO05D003776 5.5e-167 591.7 474 65.4
CiPaw.09G028500 Carya illinoinensis HOM05D003272 ORTHO05D003776 2.1e-166 589.7 344 84.9
Mapoly0087s0049 Marchantia polymorpha HOM05D003272 ORTHO05D003776 2.7e-166 589.3 523 58.9
Zm00001eb025760 Zea mays HOM05D003272 ORTHO05D003776 2.7e-166 589.3 450 66.4
Pp3c16_15960 Physcomitrium patens HOM05D003272 ORTHO05D003776 2.6e-161 572.8 518 57.9
SMO137G0342 Selaginella moellendorffii HOM05D003272 ORTHO05D003776 2.2e-160 569.7 436 65.1
Pp3c6_26480 Physcomitrium patens HOM05D003272 ORTHO05D003776 3.8e-160 568.9 504 57.9
Thhalv10016161m.g Eutrema salsugineum HOM05D003272 ORTHO05D003776 6.8e-157 558.1 402 68.7
A03p23500 Brassica napus HOM05D003272 ORTHO05D003776 1.4e-154 550.4 472 61.4
BraA03t11566Z Brassica rapa HOM05D003272 ORTHO05D003776 1.4e-154 550.4 472 61.4
BcaB01g03430 Brassica carinata HOM05D003272 ORTHO05D003776 3.5e-153 545.8 472 61.2
BolC3t15173H Brassica oleracea HOM05D003272 ORTHO05D003776 1.0e-152 544.3 472 61.0
BcaC02g12450 Brassica carinata HOM05D003272 ORTHO05D003776 1.7e-152 543.5 452 63.1
C04p03170 Brassica napus HOM05D003272 ORTHO05D003776 1.7e-152 543.5 452 63.1
A05p02660 Brassica napus HOM05D003272 ORTHO05D003776 2.2e-152 543.1 450 63.1
A05p02670 Brassica napus HOM05D003272 ORTHO05D003776 2.9e-152 542.7 474 59.9
C04p03190 Brassica napus HOM05D003272 ORTHO05D003776 3.8e-152 542.3 474 59.9
BcaC01g05316 Brassica carinata HOM05D003272 ORTHO05D003776 1.5e-151 540.4 472 60.4
CDE06G2439 Ceratophyllum demersum HOM05D003272 ORTHO05D003776 2.5e-151 539.7 477 59.3
BcaC02g12452 Brassica carinata HOM05D003272 ORTHO05D003776 7.2e-151 538.1 474 59.5
BraA05t19259Z Brassica rapa HOM05D003272 ORTHO05D003776 1.2e-150 537.3 477 59.5
Ah.13g075660 Amaranthus hybridus HOM05D003272 ORTHO05D003776 1.2e-148 530.8 456 60.7
BolC4t21957H Brassica oleracea HOM05D003272 ORTHO05D003776 1.3e-147 527.3 502 56.6
Gohir.D04G097200 Gossypium hirsutum HOM05D003272 ORTHO05D003776 2.8e-147 526.2 314 84.7
C03p28030 Brassica napus HOM05D003272 ORTHO05D003776 1.1e-146 524.2 508 56.5
Os10g0105400 Oryza sativa ssp. japonica HOM05D003272 ORTHO05D003776 4.5e-145 518.8 445 62.0
DCAR_019863 Daucus carota HOM05D003272 ORTHO05D003776 1.2e-142 510.8 471 55.8
Gorai.006G143700 Gossypium raimondii HOM05D003272 ORTHO05D003776 3.4e-140 502.7 303 83.2
CDE07G0242 Ceratophyllum demersum HOM05D003272 ORTHO05D003776 3.5e-137 492.7 402 65.2
Gohir.D09G124800 Gossypium hirsutum HOM05D003272 ORTHO05D003776 2.9e-136 489.6 303 81.8
Zm00001eb224410 Zea mays HOM05D003272 ORTHO05D003776 8.1e-126 454.9 320 72.5
VMungo1383G1563 Vigna mungo HOM05D003272 ORTHO05D003776 1.1e-125 454.5 300 77.0
DCAR_019865 Daucus carota HOM05D003272 ORTHO05D003776 4.6e-113 412.5 473 46.1
DCAR_019864 Daucus carota HOM05D003272 ORTHO05D003776 4.0e-109 399.4 476 46.2
Lj5g0000225 Lotus japonicus HOM05D003272 ORTHO05D003776 3.8e-107 392.9 301 68.8
HPP92_020307 Vanilla planifolia HOM05D003272 ORTHO05D003776 7.1e-106 388.7 480 46.7
TAR369G0864 Trochodendron aralioides HOM05D003272 ORTHO05D003776 4.8e-102 375.9 265 72.1
Manes.08G042700 Manihot esculenta HOM05D003272 ORTHO05D003776 4.9e-99 365.9 221 84.2
Oeu046727.1 Olea europaea HOM05D003272 ORTHO05D003776 3.8e-91 339.7 243 70.4
AagrBONN_evm.TU.Sc2ySwM_344.2034 Anthoceros agrestis HOM05D003272 ORTHO05D003776 1.2e-89 334.7 309 56.0
Oeu046728.2 Olea europaea HOM05D003272 ORTHO05D003776 4.3e-87 326.2 248 69.8
Glyma.02G170900 Glycine max HOM05D003272 ORTHO05D003776 1.2e-84 318.2 193 79.3
Glyma.09G211800 Glycine max HOM05D003272 ORTHO05D003776 2.0e-84 317.4 192 77.6
Hma1.2p1_0116F.1_g056150 Hydrangea macrophylla HOM05D003272 ORTHO05D003776 1.3e-83 314.7 270 62.2
SHI31755 Sapria himalayana HOM05D003272 ORTHO05D003776 6.5e-83 312.4 210 74.8
Gohir.A09G128800 Gossypium hirsutum HOM05D003272 ORTHO05D003776 5.5e-82 309.3 193 77.7
Gohir.D01G133800 Gossypium hirsutum HOM05D003272 ORTHO05D003776 2.5e-71 273.9 202 71.8
Gorai.002G165500 Gossypium raimondii HOM05D003272 ORTHO05D003776 4.8e-70 269.6 202 70.8
SHI31754 Sapria himalayana HOM05D003272 ORTHO05D003776 2.9e-67 260.4 224 58.5
Peaxi162Scf00003g04726 Petunia axillaris HOM05D003272 ORTHO05D003776 1.2e-57 228.4 174 63.8
AagrBONN_evm.TU.Sc2ySwM_344.2035 Anthoceros agrestis HOM05D003272 ORTHO05D003776 5.5e-50 203.0 214 53.3
Gohir.A09G128750 Gossypium hirsutum HOM05D003272 ORTHO05D003776 3.6e-49 200.3 129 78.3
TAR369G0389 Trochodendron aralioides HOM05D003272 ORTHO05D003776 7.0e-29 132.9 123 53.7
Cre02.g087200 Chlamydomonas reinhardtii HOM05D003272 ORTHO05D003776 7.0e-13 79.7 234 29.5
BcaB03g12386 Brassica carinata HOM05D003272 ORTHO05D003776 1.9e-10 71.6 97 44.3
BcaC04g24042 Brassica carinata HOM05D003272 ORTHO05D003776 2.5e-10 71.2 111 42.3
Nn3g17087 Nelumbo nucifera HOM05D003272 ORTHO05D003776 4.3e-10 70.5 81 48.1


User provided reference genes

Program Settings