Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.0e-157 560.1 299 100.0
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 1.2e-116 423.7 263 85.9
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 2.0e-116 422.9 263 85.9
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 8.5e-91 337.8 254 76.4
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 5.3e-69 265.4 252 65.9
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 9.4e-58 228.0 266 56.8
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 2.4e-53 213.4 263 52.9
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 3.3e-50 203.0 263 52.9
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 4.2e-50 202.6 262 53.8
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.2e-49 201.1 263 50.6
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 2.1e-49 200.3 262 52.3
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 4.7e-49 199.1 265 53.2
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.4e-48 197.6 262 49.6
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 3.0e-48 196.4 280 49.3
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 5.2e-48 195.7 272 51.1
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 5.2e-48 195.7 263 51.0
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.2e-47 194.5 262 49.2
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 1.2e-47 194.5 270 53.7
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.0e-47 193.7 262 50.0
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 2.6e-47 193.4 258 51.6
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 3.4e-47 193.0 284 49.3
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 9.8e-47 191.4 263 50.6
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.7e-46 189.5 271 51.7
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 8.3e-46 188.3 267 50.6
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.1e-45 188.0 265 49.4
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 1.1e-45 188.0 255 49.8
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 1.8e-45 187.2 259 52.1
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 1.8e-45 187.2 266 47.4
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 9.2e-45 184.9 267 50.2
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.6e-44 184.1 270 50.0
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 2.0e-44 183.7 263 49.4
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 7.8e-44 181.8 259 50.2
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 7.8e-44 181.8 263 49.0
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 1.3e-43 181.0 263 48.7
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 1.7e-43 180.6 266 51.5
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.9e-43 179.9 271 50.6
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 8.6e-43 178.3 259 49.8
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.1e-42 177.9 272 48.9
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 3.3e-42 176.4 264 47.3
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 4.3e-42 176.0 243 52.3
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 4.3e-42 176.0 263 47.9
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.6e-42 175.6 271 48.7
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 7.3e-42 175.3 291 47.4
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 7.3e-42 175.3 273 48.0
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 2.1e-41 173.7 263 49.8
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 2.1e-41 173.7 270 48.1
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.4e-40 171.0 264 47.3
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.8e-40 170.6 262 48.1
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 1.2e-39 167.9 260 48.8
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 1.5e-39 167.5 265 48.7
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.5e-39 167.5 267 45.3
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 2.0e-39 167.2 271 46.5
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 3.4e-39 166.4 267 49.8
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 3.4e-39 166.4 264 46.6
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 7.5e-39 165.2 268 44.8
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 1.3e-38 164.5 285 44.9
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.7e-38 164.1 263 48.7
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.7e-38 164.1 263 48.3
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 2.2e-38 163.7 266 46.6
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.9e-38 163.3 177 55.9
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 3.7e-38 162.9 262 48.5
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.7e-38 162.9 262 48.5
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 4.9e-38 162.5 259 46.3
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 4.9e-38 162.5 261 47.5
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.1e-37 161.4 267 44.9
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.9e-37 160.6 272 46.0
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.9e-37 160.6 272 46.0
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.4e-37 160.2 258 47.3
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 3.2e-37 159.8 269 44.2
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.1e-37 159.5 262 46.6
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 5.4e-37 159.1 264 48.5
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.0e-37 158.7 261 46.7
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 7.0e-37 158.7 258 46.9
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 9.2e-37 158.3 272 42.6
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-36 157.9 265 47.9
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.7e-36 156.8 279 44.4
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.0e-36 155.6 269 46.8
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 6.0e-36 155.6 265 44.5
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 6.0e-36 155.6 262 45.4
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 7.8e-36 155.2 192 49.0
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 1.3e-35 154.5 271 46.5
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.7e-35 154.1 259 47.1
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.7e-35 154.1 259 47.1
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 3.0e-35 153.3 264 43.6
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 3.0e-35 153.3 265 46.8
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 5.0e-35 152.5 259 47.1
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 6.6e-35 152.1 204 52.5
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-34 151.4 259 47.5
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 2.5e-34 150.2 276 43.5
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.3e-34 149.8 259 45.2
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 7.3e-34 148.7 161 56.5
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.2e-33 147.9 263 44.1
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 1.6e-33 147.5 273 44.3
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 2.1e-33 147.1 267 43.8
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 2.1e-33 147.1 266 43.2
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.1e-33 147.1 255 46.3
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 3.6e-33 146.4 266 47.7
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 6.2e-33 145.6 266 42.9
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 1.1e-32 144.8 199 49.2
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 1.4e-32 144.4 268 43.7
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.4e-32 144.4 269 43.5
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.8e-32 144.1 264 43.6
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.8e-32 144.1 264 43.6
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 1.8e-32 144.1 269 42.0
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 3.1e-32 143.3 316 40.8
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 4.0e-32 142.9 267 42.7
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 4.0e-32 142.9 270 44.4
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 5.2e-32 142.5 263 42.6
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 5.2e-32 142.5 210 46.7
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 6.8e-32 142.1 270 44.8
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.2e-31 141.4 279 42.3
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.5e-31 141.0 211 46.0
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.0e-31 140.6 250 46.4
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 2.6e-31 140.2 265 44.5
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 2.6e-31 140.2 265 44.5
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.6e-31 140.2 242 46.3
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 7.5e-31 138.7 252 43.7
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 7.5e-31 138.7 268 40.7
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 9.8e-31 138.3 268 44.0
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 1.3e-30 137.9 252 43.7
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 2.2e-30 137.1 258 43.8
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.9e-30 136.7 267 43.1
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 3.7e-30 136.3 270 44.4
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 1.4e-29 134.4 270 41.5
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 1.9e-29 134.0 160 55.0
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.9e-29 134.0 255 44.7
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 4.1e-29 132.9 203 49.3
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 7.0e-29 132.1 277 41.5
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 9.2e-29 131.7 189 48.1
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 2.1e-28 130.6 259 40.2
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.0e-27 128.3 260 40.8
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.0e-27 128.3 257 43.6
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 1.3e-27 127.9 285 38.6
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 1.3e-27 127.9 284 38.7
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 3.0e-27 126.7 269 41.6
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.5e-26 124.4 255 40.8
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 1.5e-26 124.4 268 39.9
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 1.9e-26 124.0 263 39.9
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 2.5e-26 123.6 236 40.7
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 4.3e-26 122.9 214 45.3
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 1.2e-25 121.3 148 53.4
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.6e-25 120.9 255 40.4
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 4.7e-25 119.4 259 39.0
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 6.2e-25 119.0 261 40.2
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 2.3e-24 117.1 261 39.5
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 7.5e-23 112.1 252 38.9
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 3.7e-22 109.8 274 37.2
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 6.4e-22 109.0 200 39.5
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 1.1e-21 108.2 188 42.0
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 1.4e-21 107.8 264 38.6
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 1.9e-21 107.5 189 41.8
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 4.1e-21 106.3 250 36.0
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 5.4e-21 105.9 162 48.1
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.2e-20 104.8 250 35.2
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.6e-20 102.8 249 37.3
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.6e-20 102.8 256 36.7
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.0e-19 101.7 150 41.3
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.3e-19 101.3 120 53.3
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 3.9e-19 99.8 126 50.8
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.3e-18 96.3 255 35.3
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 9.5e-18 95.1 137 44.5
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.2e-17 94.7 253 34.8
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 5.8e-15 85.9 107 49.5
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 2.9e-14 83.6 196 37.2
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 3.8e-14 83.2 224 36.6
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 4.9e-14 82.8 254 34.3
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 4.2e-13 79.7 79 59.5
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 2.1e-12 77.4 261 33.3
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 1.3e-11 74.7 71 60.6
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 1.1e-10 71.6 366 29.0
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.1e-09 67.4 78 51.3
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 3.6e-09 66.6 70 55.7
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 3.6e-09 66.6 208 32.2
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 1.4e-08 64.7 168 29.8
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.3e-06 58.2 70 50.0
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.3e-06 58.2 244 29.5
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 1.7e-06 57.8 215 33.5
ATR0605G284 Amborella trichopoda HOM05D020767 ORTHO05D003885 2.2e-06 57.4 44 63.6
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.9e-06 57.0 71 49.3
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 2.9e-06 57.0 218 31.7
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 6.4e-06 55.8 108 45.4
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 8.4e-06 55.5 165 30.9


User provided reference genes

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