Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 4.3e-281 970.7 497 100.0
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 3.2e-236 821.6 501 86.2
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 6.3e-216 754.2 513 79.1
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 7.2e-212 740.7 501 79.0
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 2.7e-134 483.0 533 54.0
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 4.5e-129 465.7 526 54.4
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 5.8e-129 465.3 540 51.9
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 4.9e-128 462.2 527 53.3
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 3.2e-127 459.5 495 54.7
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 7.1e-127 458.4 538 50.7
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 2.7e-126 456.4 507 53.5
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 6.7e-125 451.8 534 50.7
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 8.7e-125 451.4 513 51.9
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.9e-124 450.3 509 52.5
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 2.5e-124 449.9 514 52.5
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 3.3e-124 449.5 540 50.4
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 4.3e-124 449.1 520 51.5
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 5.7e-124 448.7 501 52.7
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.1e-123 446.8 553 51.7
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.4e-122 443.4 537 52.5
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.4e-122 443.4 497 52.1
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 4.5e-121 439.1 510 52.0
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 5.9e-121 438.7 508 52.2
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.9e-119 433.7 546 48.4
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 3.2e-119 433.0 531 49.5
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 3.2e-119 433.0 530 49.2
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 1.2e-118 431.0 532 51.7
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 3.6e-118 429.5 516 50.4
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 3.6e-118 429.5 570 48.1
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.6e-118 429.1 503 51.7
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.6e-118 429.1 512 51.4
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 7.9e-118 428.3 512 51.4
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 6.7e-117 425.2 527 50.3
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.9e-116 423.7 492 53.5
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 4.8e-115 419.1 533 47.3
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 6.3e-115 418.7 504 50.8
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 2.0e-113 413.7 506 48.8
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 2.0e-113 413.7 533 48.4
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 3.4e-113 412.9 497 51.7
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.3e-112 411.0 498 51.4
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 1.3e-112 411.0 523 49.1
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 8.5e-112 408.3 505 48.5
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 3.2e-111 406.4 519 48.4
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 3.2e-111 406.4 497 48.9
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.2e-110 404.4 500 48.6
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.3e-109 400.2 464 50.4
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 3.0e-109 399.8 494 50.0
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 3.9e-109 399.4 519 47.2
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 5.1e-109 399.1 537 45.6
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 1.1e-108 397.9 509 47.2
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 1.5e-108 397.5 523 47.2
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 3.3e-108 396.4 491 49.3
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 1.3e-107 394.4 502 48.6
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.8e-106 390.6 501 48.1
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 3.1e-106 389.8 503 47.3
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 4.1e-106 389.4 506 47.6
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.1e-106 389.4 486 48.8
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 9.1e-106 388.3 513 47.0
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.5e-105 387.5 503 48.5
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 3.4e-105 386.3 363 56.5
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 1.7e-104 384.0 502 47.4
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 3.2e-103 379.8 496 48.0
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.2e-103 379.4 519 47.6
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 7.2e-103 378.6 508 44.7
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.4e-101 374.4 498 47.4
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 2.3e-101 373.6 513 47.6
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 8.8e-101 371.7 479 48.6
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.5e-100 370.9 473 49.7
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 2.0e-100 370.5 454 49.8
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 2.2e-99 367.1 489 47.2
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.7e-99 366.3 353 55.5
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 4.8e-99 365.9 498 45.0
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 8.2e-99 365.2 498 45.8
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 4.1e-98 362.8 383 55.1
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 5.3e-98 362.5 498 46.0
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 5.3e-98 362.5 498 46.0
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 5.3e-98 362.5 498 46.0
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 9.1e-98 361.7 458 48.0
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 1.2e-97 361.3 443 49.2
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 1.2e-97 361.3 443 49.2
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 1.2e-97 361.3 443 49.2
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 3.5e-97 359.8 516 45.3
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 4.5e-97 359.4 496 44.8
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 7.7e-97 358.6 511 44.6
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 1.0e-96 358.2 359 54.6
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 1.3e-96 357.8 446 47.5
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 1.5e-95 354.4 360 53.1
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 4.2e-95 352.8 503 46.1
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 4.2e-95 352.8 494 44.1
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.6e-94 350.9 544 43.4
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 6.1e-94 349.0 506 45.8
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 1.0e-93 348.2 543 42.4
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 1.8e-93 347.4 507 46.5
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 1.8e-93 347.4 507 46.5
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 3.0e-93 346.7 484 45.0
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 2.0e-92 344.0 533 42.0
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 2.6e-92 343.6 469 45.6
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 2.6e-92 343.6 449 46.5
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.7e-91 340.9 423 48.5
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 4.8e-91 339.3 483 45.8
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 8.2e-91 338.6 449 46.8
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.1e-90 338.2 367 53.1
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 7.0e-90 335.5 361 52.4
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 1.3e-88 331.3 506 43.5
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 5.0e-88 329.3 350 52.0
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.9e-87 327.4 359 52.9
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 1.6e-86 324.3 447 46.1
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 2.7e-86 323.6 498 42.8
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 3.6e-86 323.2 423 46.8
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 1.0e-85 321.6 367 51.0
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 1.8e-85 320.9 368 50.5
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 2.3e-85 320.5 486 44.0
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 9.8e-84 315.1 360 50.3
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 1.3e-83 314.7 434 43.8
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.8e-82 310.8 485 41.4
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 1.6e-81 307.8 483 42.2
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.7e-81 307.0 390 46.2
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 4.5e-81 306.2 344 52.0
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.1e-79 301.6 517 39.3
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.6e-78 297.7 380 46.1
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 4.7e-78 296.2 308 54.9
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 6.8e-77 292.4 361 47.1
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.6e-76 290.4 475 39.8
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 7.5e-76 288.9 307 52.1
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 9.8e-76 288.5 363 46.3
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 2.8e-75 287.0 429 42.2
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 4.1e-74 283.1 532 38.2
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 5.4e-74 282.7 397 41.8
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 7.0e-74 282.3 331 48.9
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.6e-73 281.2 496 38.9
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.3e-72 278.1 309 49.5
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.9e-67 259.6 421 39.7
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 2.7e-65 253.8 417 37.6
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 3.5e-65 253.4 330 46.4
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.7e-64 251.1 425 35.8
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 5.2e-61 239.6 361 42.9
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 9.8e-60 235.3 293 45.1
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.3e-59 235.0 217 57.6
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.2e-53 213.0 542 31.4
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.2e-53 213.0 542 31.4
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 7.6e-44 182.6 533 29.6
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.7e-40 171.4 174 53.4
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 5.1e-40 169.9 174 52.9
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.8e-36 156.4 306 36.6
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.3e-35 155.2 528 27.1
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.2e-34 150.2 430 27.7
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.1e-34 149.4 301 34.6
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 5.1e-32 143.3 296 33.1
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.6e-32 142.9 420 27.9
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.6e-30 138.3 296 34.1
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 6.9e-29 132.9 613 24.3
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.1e-26 125.6 179 44.7
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.9e-26 124.8 587 23.2
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 5.4e-26 123.2 125 48.0
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 7.1e-26 122.9 383 25.8
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.1e-24 116.7 209 35.9
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 3.8e-19 100.5 157 43.3
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.3e-16 92.0 120 41.7
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 7.4e-15 86.3 108 44.4
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.4e-13 82.0 79 51.9
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 6.9e-13 79.7 63 65.1
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.7e-06 57.4 56 46.4


User provided reference genes

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