Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2735.3 1383 100.0
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2694.5 1383 98.0
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2681.4 1383 97.3
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2659.0 1383 96.4
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2562.7 1385 92.4
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2558.1 1384 92.2
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2554.6 1383 92.1
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2551.2 1384 91.9
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2543.1 1383 91.0
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2541.1 1384 91.5
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2537.3 1388 91.4
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2535.0 1388 91.4
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2534.2 1386 91.3
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2532.7 1383 91.5
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2532.3 1384 91.2
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2531.1 1383 91.1
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2530.7 1383 90.2
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2529.6 1384 91.2
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2528.4 1385 90.5
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2526.1 1383 90.8
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2523.4 1384 90.5
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2521.5 1383 90.1
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2521.1 1383 90.3
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2521.1 1383 91.0
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2519.2 1385 90.6
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2517.7 1398 89.9
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2515.3 1384 89.9
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2515.3 1384 91.1
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2515.0 1385 89.8
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2512.3 1399 89.9
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2512.3 1382 90.4
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2510.7 1384 90.5
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2510.7 1383 89.9
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2510.3 1384 90.5
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2510.3 1383 90.1
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2510.3 1383 90.3
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2509.9 1383 90.0
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2504.6 1383 90.8
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2503.8 1383 90.1
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2503.0 1382 89.7
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2501.5 1384 89.9
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2501.5 1386 89.9
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2499.2 1384 89.3
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2495.7 1383 88.9
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2493.4 1383 89.4
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2490.3 1383 89.3
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2489.5 1384 90.0
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2488.8 1383 89.3
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2486.4 1383 89.4
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2486.1 1384 88.7
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1383 89.2
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1384 89.2
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2482.6 1383 88.8
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2480.3 1383 89.7
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2479.9 1383 88.9
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2476.8 1383 88.7
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2476.8 1384 88.7
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1383 88.7
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1383 88.7
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2469.5 1385 88.4
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2467.2 1384 88.2
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2466.0 1384 88.2
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2465.3 1410 87.2
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2457.6 1385 87.6
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2457.6 1383 89.4
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2453.7 1384 87.9
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2453.3 1384 87.9
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2452.9 1394 87.5
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2449.5 1386 87.1
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2446.8 1335 90.4
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2443.3 1383 88.1
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2442.9 1384 86.9
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2440.6 1384 86.9
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2439.8 1386 87.8
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2436.8 1385 87.1
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2430.6 1384 87.9
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2428.3 1355 88.4
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2427.9 1384 87.9
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2425.6 1384 87.3
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2421.4 1446 83.4
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2419.0 1384 87.1
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2417.5 1384 87.1
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2411.7 1384 86.7
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2410.6 1384 86.6
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2406.7 1384 86.5
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2396.3 1385 86.8
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2393.2 1385 86.4
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2393.2 1385 86.4
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2391.7 1385 86.1
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2391.7 1385 86.3
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2391.7 1385 86.1
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2374.7 1384 86.0
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2368.6 1386 85.6
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2367.0 1384 85.7
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2351.6 1340 86.1
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2351.6 1383 85.2
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2322.0 1409 83.7
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2308.9 1331 84.4
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2304.6 1259 90.9
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2291.5 1258 91.0
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2259.2 1262 89.1
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2215.3 1343 82.9
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2196.0 1347 79.5
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2194.9 1341 79.1
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2187.9 1333 80.3
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2173.3 1348 79.1
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2173.3 1348 79.1
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2159.8 1332 78.6
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1984.5 1121 88.0
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1982.2 1381 75.3
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1964.9 1109 88.1
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1919.8 1401 73.7
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1906.3 1334 70.3
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1864.4 1346 68.4
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1706.4 913 92.6
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1687.9 914 90.6
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1629.4 898 89.9
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1495.7 808 91.0
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1492.2 809 91.0
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1163.3 690 84.8
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1119.8 675 82.4
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 7.4e-307 1057.7 669 80.1
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 5.1e-300 1035.0 571 88.1
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 1.3e-263 914.1 1199 44.5
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 2.3e-263 913.3 589 78.8
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.2e-237 827.8 471 87.9
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 8.4e-234 815.1 471 86.4
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 1.5e-230 804.3 472 86.0
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 1.1e-214 751.5 472 81.1
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 6.0e-208 729.2 398 90.2
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 7.2e-177 625.9 1399 32.7
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.6e-160 571.6 1488 29.8
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 1.1e-111 409.5 1281 28.5
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.1e-89 336.3 175 94.3
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 3.9e-66 258.1 147 85.7
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 2.5e-60 238.8 123 93.5
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 4.1e-47 194.9 107 91.6
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 1.5e-41 176.4 174 58.0
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 7.0e-31 141.0 139 51.8
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 1.9e-28 132.9 99 69.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 2.8e-27 129.0 91 73.6
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 3.3e-20 105.5 60 86.7


User provided reference genes

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