Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 6.0e-225 783.9 403 100.0
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 1.3e-214 749.6 402 95.0
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 1.3e-211 739.6 400 94.2
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 9.6e-207 723.4 402 92.0
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 2.4e-181 639.0 393 84.0
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 6.5e-179 630.9 386 82.6
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 4.8e-174 614.8 392 80.1
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 5.2e-168 594.7 404 76.5
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 5.7e-167 591.3 400 78.2
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 4.8e-166 588.2 395 75.7
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 4.8e-166 588.2 388 78.4
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 1.1e-165 587.0 394 79.4
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 7.0e-165 584.3 400 75.5
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 2.2e-163 579.3 366 80.6
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 2.9e-163 578.9 398 76.6
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 1.1e-162 577.0 389 76.3
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 1.1e-162 577.0 365 80.0
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.9e-162 576.2 395 75.2
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.9e-162 576.2 395 75.2
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.9e-162 576.2 395 75.2
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 3.2e-162 575.5 390 76.7
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 4.7e-161 571.6 399 73.9
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 6.1e-161 571.2 361 79.5
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 8.0e-161 570.9 401 74.8
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 1.0e-160 570.5 408 73.0
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 1.4e-160 570.1 399 75.7
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 1.8e-160 569.7 401 73.3
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 4.0e-160 568.5 396 74.2
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 5.2e-160 568.2 352 81.2
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 8.8e-160 567.4 398 75.4
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 2.0e-159 566.2 401 73.1
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 3.4e-159 565.5 394 74.1
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 1.3e-158 563.5 402 74.9
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 2.8e-158 562.4 353 80.5
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 8.3e-158 560.8 393 73.5
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 8.3e-158 560.8 389 74.8
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 1.1e-157 560.5 352 81.2
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 3.1e-157 558.9 395 73.4
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 4.1e-157 558.5 403 73.2
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 1.2e-156 557.0 386 74.4
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.2e-156 557.0 386 74.4
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.2e-156 557.0 386 74.9
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 4.5e-156 555.1 400 72.5
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 1.7e-155 553.1 378 75.9
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 2.3e-155 552.7 387 74.7
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 2.9e-155 552.4 392 72.4
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 1.9e-154 549.7 361 78.4
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 1.9e-154 549.7 461 65.9
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 6.1e-153 544.7 394 72.3
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 1.0e-152 543.9 394 69.8
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 1.8e-152 543.1 388 71.1
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.3e-152 542.7 311 84.9
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 3.0e-152 542.3 395 70.1
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 4.0e-152 542.0 349 77.7
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 4.0e-152 542.0 399 70.9
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.2e-152 541.6 396 69.7
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 2.6e-151 539.3 396 71.7
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 3.4e-151 538.9 354 77.7
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 1.8e-149 533.1 353 77.3
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 4.1e-149 531.9 386 72.8
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 4.1e-149 531.9 388 72.2
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 2.0e-148 529.6 361 75.9
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 1.0e-147 527.3 411 66.4
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 3.0e-147 525.8 387 69.5
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 1.1e-146 523.9 409 69.7
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 1.1e-146 523.9 397 69.3
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 1.5e-146 523.5 389 68.6
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 4.3e-146 521.9 283 90.8
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 1.2e-145 520.4 390 70.8
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 1.2e-145 520.4 398 68.8
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 8.0e-145 517.7 320 78.4
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 1.0e-144 517.3 402 68.2
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 3.1e-144 515.8 363 71.9
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 5.2e-144 515.0 420 65.7
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 5.2e-144 515.0 315 79.0
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 5.2e-144 515.0 372 71.8
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 2.2e-142 509.6 368 70.7
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 4.9e-142 508.4 315 78.1
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 6.4e-142 508.1 393 68.4
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 6.4e-142 508.1 392 67.1
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 7.0e-141 504.6 388 68.6
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 1.2e-140 503.8 375 68.5
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 7.8e-140 501.1 400 67.2
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 7.8e-140 501.1 403 65.8
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 1.3e-139 500.4 402 66.7
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 3.0e-139 499.2 354 69.8
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 3.0e-139 499.2 354 69.8
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 3.0e-139 499.2 354 69.8
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 3.9e-139 498.8 406 66.5
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 6.6e-139 498.0 403 65.5
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 3.6e-137 492.3 397 66.0
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 6.8e-136 488.0 362 68.5
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 1.5e-135 486.9 355 69.6
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 2.0e-135 486.5 412 65.0
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 2.0e-135 486.5 343 69.7
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 2.0e-135 486.5 343 70.0
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 4.4e-135 485.3 387 65.6
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 3.7e-134 482.3 406 62.6
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 8.3e-134 481.1 402 65.4
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 2.7e-132 476.1 353 68.0
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 3.9e-131 472.2 389 64.5
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 2.8e-129 466.1 374 63.4
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 8.1e-129 464.5 318 70.4
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 5.2e-128 461.8 355 68.5
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 1.4e-125 453.8 336 67.0
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 7.8e-116 421.4 383 59.8
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 3.0e-115 419.5 312 69.2
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 5.6e-114 415.2 353 59.5
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 6.0e-108 395.2 363 56.7
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 6.7e-107 391.7 389 57.1
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.1e-105 386.7 315 61.9
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 6.2e-105 385.2 282 70.9
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.4e-104 384.0 317 58.4
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.6e-100 370.5 401 52.6
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 5.8e-95 352.1 322 55.3
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 7.1e-93 345.1 341 53.4
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 4.8e-57 226.1 146 73.3
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 4.8e-57 226.1 125 88.0
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 1.1e-37 161.8 332 30.7
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 6.8e-35 152.5 356 31.2
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 8.3e-33 145.6 170 50.0
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 1.2e-26 125.2 301 28.2
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 3.4e-18 97.1 244 28.7
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 2.8e-12 77.4 68 58.8
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 2.1e-07 61.2 48 64.6


User provided reference genes

Program Settings