Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 9.4e-130 466.8 233 100.0
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 1.5e-90 336.7 174 97.1
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.1e-88 330.5 174 96.0
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 3.6e-81 305.4 172 88.4
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 1.4e-72 276.9 168 84.5
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 8.9e-72 274.2 173 81.5
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.2e-71 273.9 167 82.6
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 1.2e-71 273.9 176 79.0
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 2.0e-71 273.1 170 81.8
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 5.8e-71 271.6 171 81.3
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 9.9e-71 270.8 170 80.6
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 9.9e-71 270.8 171 80.1
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.7e-70 270.0 171 79.5
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.7e-70 270.0 171 79.5
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 2.2e-70 269.6 170 80.0
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 2.9e-70 269.2 171 81.9
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 3.8e-70 268.9 170 81.2
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 4.9e-70 268.5 173 78.6
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 4.9e-70 268.5 170 81.8
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 4.9e-70 268.5 176 76.7
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 6.4e-70 268.1 177 77.4
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 8.4e-70 267.7 173 76.9
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 1.1e-69 267.3 174 77.0
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 2.4e-69 266.2 168 78.0
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 2.4e-69 266.2 175 77.7
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.4e-69 266.2 168 81.0
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 3.2e-69 265.8 174 76.4
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 4.2e-69 265.4 170 78.8
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 5.4e-69 265.0 176 77.3
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 5.4e-69 265.0 170 78.2
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 5.4e-69 265.0 168 79.2
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 7.1e-69 264.6 165 83.0
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 7.1e-69 264.6 171 78.4
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 7.1e-69 264.6 171 80.7
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 9.3e-69 264.2 170 78.8
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.2e-68 263.8 171 78.4
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 1.6e-68 263.5 172 77.3
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.1e-68 263.1 173 78.6
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 2.7e-68 262.7 170 78.2
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.5e-68 262.3 240 60.8
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.3e-67 260.4 170 78.8
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 1.7e-67 260.0 175 77.1
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 1.7e-67 260.0 180 75.0
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 1.7e-67 260.0 168 78.6
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 3.0e-67 259.2 173 76.3
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.0e-67 259.2 168 78.6
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 5.1e-67 258.5 172 78.5
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 6.6e-67 258.1 166 77.7
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 6.6e-67 258.1 176 75.0
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 6.6e-67 258.1 177 75.7
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 6.6e-67 258.1 173 77.5
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.7e-67 257.7 167 77.8
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 8.7e-67 257.7 168 78.6
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 8.7e-67 257.7 175 76.6
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 8.7e-67 257.7 171 77.2
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 8.7e-67 257.7 164 79.3
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.1e-66 257.3 168 78.0
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.5e-66 256.9 171 77.2
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 1.9e-66 256.5 175 74.9
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 2.5e-66 256.1 168 76.8
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 2.5e-66 256.1 175 75.4
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 2.5e-66 256.1 171 77.8
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 3.3e-66 255.8 178 74.2
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 3.3e-66 255.8 170 75.3
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 3.3e-66 255.8 168 76.2
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 4.3e-66 255.4 175 74.3
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 4.3e-66 255.4 175 75.4
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 5.6e-66 255.0 168 76.8
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 5.6e-66 255.0 175 74.9
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 5.6e-66 255.0 172 76.2
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 5.6e-66 255.0 171 77.2
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 7.3e-66 254.6 171 76.6
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 7.3e-66 254.6 174 75.9
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 7.3e-66 254.6 168 77.4
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 7.3e-66 254.6 172 72.7
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 7.3e-66 254.6 195 69.7
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 9.6e-66 254.2 171 77.8
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 1.3e-65 253.8 168 76.2
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.3e-65 253.8 175 74.3
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 1.3e-65 253.8 182 73.1
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 1.6e-65 253.4 175 74.9
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 2.1e-65 253.1 175 77.1
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 2.1e-65 253.1 168 76.8
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.8e-65 252.7 175 74.9
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 2.8e-65 252.7 170 76.5
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.8e-65 251.9 175 75.4
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.8e-65 251.9 175 74.9
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.8e-65 251.9 175 74.3
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 8.1e-65 251.1 171 73.7
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 8.1e-65 251.1 168 75.6
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.1e-64 250.8 168 76.8
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 1.1e-64 250.8 177 74.0
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.4e-64 249.6 175 73.7
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 3.1e-64 249.2 175 73.1
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 4.0e-64 248.8 175 73.7
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.0e-64 248.8 175 74.3
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 5.3e-64 248.4 171 74.3
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 5.3e-64 248.4 171 75.4
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 6.9e-64 248.1 168 75.0
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 1.5e-63 246.9 175 73.1
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 2.6e-63 246.1 168 75.6
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 4.5e-63 245.4 164 75.0
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 5.8e-63 245.0 172 73.3
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 5.8e-63 245.0 178 73.0
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 2.2e-62 243.0 168 74.4
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.9e-62 242.7 209 63.6
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 3.8e-62 242.3 171 73.1
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 6.4e-62 241.5 168 73.8
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 6.4e-62 241.5 166 75.3
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 8.4e-62 241.1 178 69.7
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 1.4e-61 240.4 172 70.9
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 3.2e-61 239.2 171 73.7
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 7.1e-61 238.0 150 82.0
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.2e-60 237.3 160 75.6
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 2.7e-60 236.1 167 73.1
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 2.7e-60 236.1 181 69.1
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 6.0e-60 235.0 171 70.8
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 7.9e-60 234.6 168 71.4
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 1.0e-59 234.2 171 74.3
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 1.9e-58 229.9 170 71.2
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 9.6e-58 227.6 173 68.2
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.7e-57 225.7 201 61.2
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 6.2e-57 224.9 149 75.8
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 1.8e-56 223.4 149 75.2
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 1.5e-55 220.3 176 68.8
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 5.8e-55 218.4 168 69.6
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 1.6e-49 200.3 147 70.7
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 6.5e-46 188.3 120 82.5
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 9.3e-45 184.5 168 63.7
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.2e-44 184.1 170 61.2
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 6.0e-44 181.8 162 55.6
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 6.0e-44 181.8 116 79.3
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 2.3e-43 179.9 165 54.5
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 7.4e-42 174.9 162 53.7
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 1.3e-41 174.1 116 73.3
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 2.8e-41 172.9 172 53.5
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 3.7e-41 172.6 116 77.6
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 2.4e-40 169.9 167 52.7
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 1.0e-35 154.5 160 52.5
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 1.9e-34 150.2 170 49.4
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 3.3e-34 149.4 222 42.3
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.3e-34 149.1 154 56.5
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 1.8e-32 143.7 83 81.9
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.1e-32 142.9 169 53.3
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 5.3e-32 142.1 86 80.2
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 2.9e-30 136.3 83 79.5
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 1.1e-29 134.4 97 73.2
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 1.4e-29 134.0 162 46.3
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 5.5e-29 132.1 116 64.7
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 6.1e-28 128.6 139 53.2
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 1.4e-27 127.5 85 72.9
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.2e-23 114.4 82 70.7
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 1.5e-23 114.0 113 57.5
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.9e-22 109.8 85 67.1
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 1.2e-20 104.4 93 61.3
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 6.1e-20 102.1 81 63.0
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 3.0e-19 99.8 75 70.7
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 3.3e-18 96.3 137 46.0
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 2.0e-15 87.0 221 34.8
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 5.7e-10 68.9 52 65.4
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 7.5e-10 68.6 49 63.3
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 8.2e-09 65.1 53 60.4
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 1.8e-08 63.9 84 46.4
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 2.7e-07 60.1 42 64.3


User provided reference genes

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