Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 1.5e-130 469.5 235 100.0
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 1.2e-121 439.9 235 93.2
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 1.4e-120 436.4 235 91.9
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 1.1e-98 363.6 232 80.6
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 8.1e-89 330.9 191 84.3
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.4e-88 330.1 226 75.7
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 5.3e-88 328.2 205 82.0
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 6.9e-88 327.8 214 74.8
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 1.5e-87 326.6 207 78.3
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 1.9e-85 319.7 191 81.2
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 5.5e-85 318.2 208 77.9
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 1.6e-84 316.6 230 70.9
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 2.1e-84 316.2 209 76.6
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 3.5e-84 315.5 229 70.3
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 3.5e-84 315.5 215 73.5
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 1.0e-83 313.9 206 75.7
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 1.3e-83 313.5 198 78.8
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 3.0e-83 312.4 234 70.5
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 7.4e-82 307.8 192 77.1
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 7.4e-82 307.8 232 69.4
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 1.3e-81 307.0 225 70.2
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 2.8e-81 305.8 189 79.4
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 1.1e-80 303.9 194 77.3
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 1.4e-80 303.5 211 73.0
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 1.8e-80 303.1 191 76.4
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.4e-80 302.8 229 67.2
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.0e-79 299.7 207 71.5
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 2.6e-79 299.3 192 77.1
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 5.8e-79 298.1 191 75.4
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 5.8e-79 298.1 198 74.2
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 5.8e-79 298.1 191 77.5
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 1.0e-78 297.4 176 83.0
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 1.0e-78 297.4 207 72.5
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.9e-78 295.8 207 70.5
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 2.9e-78 295.8 201 74.6
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 8.4e-78 294.3 188 79.3
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 1.4e-77 293.5 228 68.4
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.9e-77 293.1 204 73.0
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 4.2e-77 292.0 210 68.1
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 4.2e-77 292.0 186 79.6
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 5.5e-77 291.6 205 73.2
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 9.3e-77 290.8 214 67.8
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 2.1e-76 289.7 195 71.3
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 7.9e-76 287.7 219 67.6
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 1.0e-75 287.3 214 67.8
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 1.0e-75 287.3 215 68.8
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.0e-75 287.3 205 71.7
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 1.0e-75 287.3 195 70.8
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.3e-75 287.0 207 68.6
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 1.8e-75 286.6 176 79.0
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 2.3e-75 286.2 195 71.3
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 3.0e-75 285.8 200 69.5
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 3.9e-75 285.4 209 68.4
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 5.1e-75 285.0 192 73.4
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 5.1e-75 285.0 184 77.2
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 5.1e-75 285.0 195 70.8
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 6.7e-75 284.6 192 73.4
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 8.7e-75 284.3 192 71.9
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 8.7e-75 284.3 229 65.9
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.1e-74 283.9 204 71.1
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 1.1e-74 283.9 207 71.0
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 1.9e-74 283.1 190 73.2
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 3.3e-74 282.3 195 71.3
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.3e-74 282.3 207 67.1
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 3.3e-74 282.3 192 73.4
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 9.6e-74 280.8 206 68.4
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 9.6e-74 280.8 208 68.3
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 1.3e-73 280.4 192 72.4
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 1.3e-73 280.4 300 55.7
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 1.3e-73 280.4 184 77.2
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 1.3e-73 280.4 190 72.6
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.1e-73 279.6 205 71.2
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 1.4e-72 276.9 175 77.7
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 1.8e-72 276.6 208 67.3
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 1.8e-72 276.6 191 69.6
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 1.8e-72 276.6 205 68.8
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 4.1e-72 275.4 209 67.5
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 6.9e-72 274.6 187 73.3
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 2.6e-71 272.7 198 67.7
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 2.6e-71 272.7 210 64.3
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 2.6e-71 272.7 186 74.7
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 3.4e-71 272.3 208 66.8
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 4.5e-71 271.9 208 67.3
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 1.0e-70 270.8 181 71.3
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 3.8e-70 268.9 192 70.8
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.1e-69 267.3 186 73.7
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 7.2e-69 264.6 201 67.2
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 6.1e-68 261.5 214 61.2
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.0e-67 260.8 187 71.1
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 2.3e-67 259.6 145 86.2
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 2.5e-66 256.1 183 68.3
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 1.4e-64 250.4 286 52.4
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.2e-63 247.3 189 64.6
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 8.5e-62 241.1 200 62.0
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 2.1e-60 236.5 195 64.6
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 2.0e-58 229.9 141 77.3
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 2.5e-58 229.6 189 62.4
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 6.3e-57 224.9 186 60.8
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 2.4e-56 223.0 150 73.3
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 1.2e-55 220.7 196 56.6
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 3.4e-55 219.2 196 56.6
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 8.5e-54 214.5 154 68.2
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 8.5e-54 214.5 164 65.2
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 5.7e-50 201.8 165 63.0
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.1e-42 177.6 102 85.3
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 1.4e-40 170.6 167 53.3
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 1.8e-40 170.2 167 52.1
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 1.7e-38 163.7 167 50.3
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.5e-34 150.6 98 70.4
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 3.4e-34 149.4 142 51.4
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 4.5e-31 139.0 134 59.7
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 3.6e-28 129.4 79 75.9
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 5.2e-27 125.6 100 66.0
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.4e-26 122.9 78 74.4
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 7.5e-26 121.7 78 73.1
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.4e-24 117.5 78 70.5
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 1.0e-22 111.3 162 42.0
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 6.6e-22 108.6 61 83.6
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 1.9e-21 107.1 61 82.0
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 2.9e-17 93.2 77 59.7
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.0e-14 84.7 54 74.1
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 5.8e-10 68.9 39 79.5
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 2.9e-09 66.6 40 75.0
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 2.4e-08 63.5 40 70.0
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 3.2e-08 63.2 39 74.4
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 5.4e-08 62.4 35 85.7
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 3.0e-06 56.6 83 45.8


User provided reference genes

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