Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 6.7e-142 507.3 247 100.0
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 4.9e-137 491.1 246 96.3
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 6.7e-134 480.7 246 94.7
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.9e-112 409.5 244 79.9
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 4.7e-111 404.8 246 77.2
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 3.9e-110 401.7 244 78.3
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 3.9e-110 401.7 246 76.4
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 3.9e-110 401.7 246 77.6
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 3.3e-109 398.7 244 77.5
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 3.3e-109 398.7 246 78.9
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 5.7e-109 397.9 246 77.6
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 9.7e-109 397.1 246 76.4
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 9.7e-109 397.1 246 77.6
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.3e-108 396.7 246 76.8
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.7e-108 396.4 244 76.6
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 1.7e-108 396.4 244 77.0
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 4.8e-108 394.8 246 74.0
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 1.1e-107 393.7 244 78.7
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 1.8e-107 392.9 244 77.0
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.5e-106 389.8 246 73.2
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 1.5e-106 389.8 244 77.5
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 2.0e-106 389.4 244 75.8
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 2.0e-106 389.4 246 74.0
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 2.0e-106 389.4 246 76.8
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 5.9e-106 387.9 246 73.6
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 1.3e-105 386.7 246 75.2
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 2.2e-105 386.0 244 75.8
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 2.2e-105 386.0 246 73.6
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 3.8e-105 385.2 267 69.7
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 3.8e-105 385.2 267 69.7
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 8.5e-105 384.0 195 94.4
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 8.5e-105 384.0 246 75.2
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.9e-104 382.9 246 74.8
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 1.9e-104 382.9 244 75.0
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 3.2e-104 382.1 244 75.8
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 5.5e-104 381.3 246 74.4
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 5.5e-104 381.3 246 72.4
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 9.4e-104 380.6 244 75.0
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 9.4e-104 380.6 200 91.0
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 1.2e-103 380.2 244 72.5
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 1.6e-103 379.8 246 74.8
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 2.1e-103 379.4 245 75.5
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 2.1e-103 379.4 245 75.5
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.1e-103 379.4 246 74.4
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.1e-103 379.4 246 74.4
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.7e-103 379.0 246 75.2
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 8.0e-103 377.5 245 74.3
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 1.0e-102 377.1 244 74.2
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 1.4e-102 376.7 244 74.6
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 1.8e-102 376.3 245 75.1
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 1.8e-102 376.3 247 73.7
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.8e-102 376.3 246 74.0
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 1.8e-102 376.3 245 75.5
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.8e-102 376.3 244 74.2
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 2.3e-102 375.9 244 73.8
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 3.9e-102 375.2 244 74.2
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 3.9e-102 375.2 244 73.8
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 3.9e-102 375.2 244 73.8
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.2e-102 374.8 244 73.4
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 8.8e-102 374.0 246 73.2
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.1e-101 373.6 246 73.2
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 1.1e-101 373.6 247 73.3
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 1.1e-101 373.6 244 72.5
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.5e-101 373.2 245 74.7
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 1.5e-101 373.2 244 73.4
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 2.0e-101 372.9 245 74.7
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 2.0e-101 372.9 244 72.5
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 2.0e-101 372.9 246 73.2
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 2.6e-101 372.5 244 73.4
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 4.4e-101 371.7 244 72.1
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 4.4e-101 371.7 244 72.1
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 4.4e-101 371.7 244 72.1
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 7.4e-101 370.9 242 73.6
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 9.7e-101 370.5 246 70.7
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 2.2e-100 369.4 245 73.1
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 4.8e-100 368.2 245 72.7
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 4.8e-100 368.2 245 72.7
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 4.8e-100 368.2 244 72.5
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 6.3e-100 367.9 245 73.1
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 8.2e-100 367.5 245 73.1
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 8.2e-100 367.5 245 73.1
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 1.1e-99 367.1 243 73.7
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 1.4e-99 366.7 245 72.2
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.4e-99 366.7 242 72.3
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 1.4e-99 366.7 244 71.3
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.8e-99 366.3 244 70.1
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.8e-99 366.3 244 70.1
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 1.8e-99 366.3 244 70.1
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 4.1e-99 365.2 245 72.7
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 4.1e-99 365.2 245 72.7
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 4.1e-99 365.2 242 71.5
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 4.1e-99 365.2 242 69.4
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 4.1e-99 365.2 244 71.3
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 5.3e-99 364.8 245 72.7
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 5.3e-99 364.8 245 72.2
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 7.0e-99 364.4 245 72.2
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 9.1e-99 364.0 245 72.2
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 9.1e-99 364.0 248 71.8
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 9.1e-99 364.0 245 72.2
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 1.2e-98 363.6 245 72.2
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 1.2e-98 363.6 244 72.5
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 2.0e-98 362.8 244 71.7
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 4.5e-98 361.7 246 70.7
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 1.3e-97 360.1 247 70.9
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.7e-97 359.8 244 71.3
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 2.9e-97 359.0 242 67.8
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 5.0e-97 358.2 247 70.4
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 5.0e-97 358.2 244 71.7
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 6.5e-97 357.8 247 70.9
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 6.5e-97 357.8 247 70.9
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 1.5e-96 356.7 248 71.4
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 1.5e-96 356.7 248 71.4
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 1.9e-96 356.3 247 70.4
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 2.5e-96 355.9 247 70.9
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 3.2e-96 355.5 244 70.5
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 4.2e-96 355.1 244 69.7
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 4.2e-96 355.1 242 67.8
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 5.5e-96 354.8 245 72.7
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.6e-95 352.1 244 69.3
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 6.1e-95 351.3 242 69.8
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 6.8e-94 347.8 244 67.6
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 6.8e-94 347.8 247 68.4
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 1.5e-93 346.7 244 69.7
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 4.4e-93 345.1 250 68.0
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 5.7e-93 344.7 244 66.8
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 2.8e-92 342.4 301 58.1
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 1.8e-91 339.7 250 67.2
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 2.4e-91 339.3 244 66.8
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 7.0e-91 337.8 246 65.9
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 1.2e-90 337.0 243 67.5
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 2.7e-90 335.9 243 67.1
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 5.9e-90 334.7 241 67.6
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 1.0e-89 334.0 244 66.0
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 3.8e-89 332.0 245 67.3
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 3.2e-88 328.9 243 68.3
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.4e-83 313.5 244 65.6
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 4.1e-83 312.0 242 63.2
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 8.6e-81 304.3 247 61.9
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 8.6e-81 304.3 242 63.2
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.9e-80 303.1 200 72.5
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 5.5e-80 301.6 242 62.4
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 1.8e-78 296.6 219 66.2
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 5.2e-78 295.0 192 74.0
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 5.7e-77 291.6 193 68.9
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 3.7e-76 288.9 246 61.0
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 6.3e-76 288.1 246 62.2
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 3.6e-71 272.3 244 57.0
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.4e-70 270.4 244 56.6
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 2.2e-68 263.1 244 55.7
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 9.5e-56 221.1 152 66.4
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 3.4e-53 212.6 199 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 1.7e-52 210.3 195 53.8
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 9.6e-48 194.5 199 49.2
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 3.2e-43 179.5 195 46.7
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 5.6e-40 168.7 103 75.7
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 1.6e-39 167.2 103 73.8
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 4.8e-39 165.6 103 73.8
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 8.1e-39 164.9 205 46.8
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 8.1e-39 164.9 103 71.8
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 2.9e-36 156.4 145 53.1
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 1.2e-26 124.4 87 70.1
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 8.4e-12 75.1 192 29.2


User provided reference genes

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