Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G015880 Citrullus lanatus HOM05D006529 ORTHO05D008380 7.6e-112 407.1 200 100.0
Sed0011062 Sechium edule HOM05D006529 ORTHO05D008380 3.7e-90 335.1 194 83.0
MELO3C015437.2 Cucumis melo HOM05D006529 ORTHO05D008380 6.3e-90 334.3 200 81.5
Prupe.7G215100 Prunus persica HOM05D006529 ORTHO05D008380 3.2e-78 295.4 198 69.7
MD02G1072300 Malus domestica HOM05D006529 ORTHO05D008380 1.6e-77 293.1 198 67.7
RcHm_v2.0_Chr2g0092481 Rosa chinensis HOM05D006529 ORTHO05D008380 1.0e-76 290.4 198 69.2
PGR142G1231 Punica granatum HOM05D006529 ORTHO05D008380 3.9e-76 288.5 189 69.8
FvH4_1g06740 Fragaria vesca HOM05D006529 ORTHO05D008380 5.7e-75 284.6 198 66.2
FAN19G1593 Fragaria x ananassa HOM05D006529 ORTHO05D008380 5.7e-75 284.6 198 66.2
FAN23G2505 Fragaria x ananassa HOM05D006529 ORTHO05D008380 9.7e-75 283.9 198 65.7
TAR624G0297 Trochodendron aralioides HOM05D006529 ORTHO05D008380 9.7e-75 283.9 200 64.0
Cfa003138 Carpinus fangiana HOM05D006529 ORTHO05D008380 1.8e-73 279.6 197 66.5
CiPaw.04G153200 Carya illinoinensis HOM05D006529 ORTHO05D008380 9.1e-73 277.3 196 66.8
MD15G1202100 Malus domestica HOM05D006529 ORTHO05D008380 1.5e-72 276.6 198 64.6
Manes.16G105400 Manihot esculenta HOM05D006529 ORTHO05D008380 1.5e-72 276.6 198 63.6
CSS0016193 Camellia sinensis var. sinensis HOM05D006529 ORTHO05D008380 3.4e-72 275.4 197 65.5
Eucgr.C00932 Eucalyptus grandis HOM05D006529 ORTHO05D008380 4.5e-72 275.0 207 61.4
Atru.chr7.1518 Acer truncatum HOM05D006529 ORTHO05D008380 1.3e-71 273.5 203 65.5
FAN14G0658 Fragaria x ananassa HOM05D006529 ORTHO05D008380 2.9e-71 272.3 197 63.5
Dinv42286 Davidia involucrata HOM05D006529 ORTHO05D008380 3.8e-71 271.9 213 62.4
TWI63G1011 Tripterygium wilfordii HOM05D006529 ORTHO05D008380 5.5e-70 268.1 200 64.0
GSVIVG01015253001 Vitis vinifera HOM05D006529 ORTHO05D008380 1.6e-69 266.5 202 65.3
Duzib150G0994 Durio zibethinus HOM05D006529 ORTHO05D008380 2.1e-69 266.2 198 61.6
CANSAT56G2962 Cannabis sativa HOM05D006529 ORTHO05D008380 2.7e-69 265.8 193 63.7
Nn6g35394 Nelumbo nucifera HOM05D006529 ORTHO05D008380 3.6e-69 265.4 200 61.0
Ciclev10009577m.g Citrus clementina HOM05D006529 ORTHO05D008380 4.7e-69 265.0 199 65.8
CsaV3_UNG050340 Cucumis sativus L. HOM05D006529 ORTHO05D008380 6.1e-69 264.6 137 88.3
Lalb_Chr05g0223501 Lupinus albus HOM05D006529 ORTHO05D008380 7.9e-69 264.2 198 62.6
COL.COLO4_18251 Corchorus olitorius HOM05D006529 ORTHO05D008380 1.0e-68 263.8 211 59.7
Glyma.05G223900 Glycine max HOM05D006529 ORTHO05D008380 1.4e-68 263.5 198 62.1
Nn8g38953 Nelumbo nucifera HOM05D006529 ORTHO05D008380 2.3e-68 262.7 205 60.0
AUR62000487 Chenopodium quinoa HOM05D006529 ORTHO05D008380 3.9e-68 261.9 202 61.4
Ca_17386_v3 Cicer arietinum L. HOM05D006529 ORTHO05D008380 6.7e-68 261.2 198 63.1
Glyma.08G031000 Glycine max HOM05D006529 ORTHO05D008380 6.7e-68 261.2 198 61.1
AT4G26240 Arabidopsis thaliana HOM05D006529 ORTHO05D008380 8.8e-68 260.8 202 62.4
Thecc.09G094900 Theobroma cacao HOM05D006529 ORTHO05D008380 1.1e-67 260.4 205 60.5
Gohir.A05G027800 Gossypium hirsutum HOM05D006529 ORTHO05D008380 1.5e-67 260.0 200 59.0
Lj4g0018594 Lotus japonicus HOM05D006529 ORTHO05D008380 1.5e-67 260.0 198 61.6
AL7G26720 Arabidopsis lyrata HOM05D006529 ORTHO05D008380 2.0e-67 259.6 200 62.5
AUR62006831 Chenopodium quinoa HOM05D006529 ORTHO05D008380 2.0e-67 259.6 202 61.4
QL02p063543 Quercus lobata HOM05D006529 ORTHO05D008380 5.7e-67 258.1 238 55.0
Sp7g24240 Schrenkiella parvula HOM05D006529 ORTHO05D008380 5.7e-67 258.1 201 62.2
Carub.0007s1471 Capsella rubella HOM05D006529 ORTHO05D008380 7.4e-67 257.7 202 61.4
Potri.006G153800 Populus trichocarpa HOM05D006529 ORTHO05D008380 7.4e-67 257.7 201 63.2
Gohir.D05G029600 Gossypium hirsutum HOM05D006529 ORTHO05D008380 1.3e-66 256.9 200 58.5
Gorai.009G029800 Gossypium raimondii HOM05D006529 ORTHO05D008380 1.3e-66 256.9 200 58.5
CARHR233790 Cardamine hirsuta HOM05D006529 ORTHO05D008380 1.7e-66 256.5 200 62.0
Dinv36729 Davidia involucrata HOM05D006529 ORTHO05D008380 2.8e-66 255.8 206 60.2
Thhalv10026289m.g Eutrema salsugineum HOM05D006529 ORTHO05D008380 3.7e-66 255.4 202 61.9
Lj7C671T1 Lonicera japonica HOM05D006529 ORTHO05D008380 3.7e-66 255.4 215 60.9
A03p56550 Brassica napus HOM05D006529 ORTHO05D008380 6.3e-66 254.6 204 60.8
arahy.Tifrunner.gnm1.ann1.YG2MQU Arachis hypogaea HOM05D006529 ORTHO05D008380 1.4e-65 253.4 198 60.6
Hund07265 Selenicereus undatus HOM05D006529 ORTHO05D008380 2.4e-65 252.7 203 60.6
CsaV3_1G040070 Cucumis sativus L. HOM05D006529 ORTHO05D008380 3.1e-65 252.3 164 79.3
VMungo0251G0255 Vigna mungo HOM05D006529 ORTHO05D008380 4.1e-65 251.9 198 59.1
Medtr8g101990 Medicago truncatula HOM05D006529 ORTHO05D008380 7.0e-65 251.1 199 61.3
arahy.Tifrunner.gnm1.ann1.HB8I5Y Arachis hypogaea HOM05D006529 ORTHO05D008380 9.1e-65 250.8 198 60.1
Nitab4.5_0004011g0030 Nicotiana tabacum HOM05D006529 ORTHO05D008380 9.1e-65 250.8 207 59.4
THA.LOC104813489 Tarenaya hassleriana HOM05D006529 ORTHO05D008380 1.2e-64 250.4 201 60.7
C07p54750 Brassica napus HOM05D006529 ORTHO05D008380 2.0e-64 249.6 204 60.8
BolC7t45964H Brassica oleracea HOM05D006529 ORTHO05D008380 2.0e-64 249.6 204 60.8
CAN.G142.8 Capsicum annuum HOM05D006529 ORTHO05D008380 2.6e-64 249.2 203 59.6
ECA240G3812 Erigeron canadensis HOM05D006529 ORTHO05D008380 4.5e-64 248.4 186 62.9
Ah.06g190810 Amaranthus hybridus HOM05D006529 ORTHO05D008380 1.0e-63 247.3 198 59.6
Psat7g019320 Pisum sativum HOM05D006529 ORTHO05D008380 1.7e-63 246.5 199 59.8
Cc06_g10920 Coffea canephora HOM05D006529 ORTHO05D008380 2.2e-63 246.1 200 60.0
Actinidia29893 Actinidia chinensis HOM05D006529 ORTHO05D008380 2.9e-63 245.7 218 59.6
BraA03t14725Z Brassica rapa HOM05D006529 ORTHO05D008380 5.0e-63 245.0 205 59.0
vmacro06269 Vaccinium macrocarpon HOM05D006529 ORTHO05D008380 8.5e-63 244.2 207 60.4
BcaC06g32765 Brassica carinata HOM05D006529 ORTHO05D008380 1.9e-62 243.0 206 58.7
Haze_25864 Corylus avellana HOM05D006529 ORTHO05D008380 5.5e-62 241.5 197 59.4
Phvul.002G305700 Phaseolus vulgaris HOM05D006529 ORTHO05D008380 1.6e-61 240.0 198 58.1
Aqoxy7G01329 Aquilegia oxysepala HOM05D006529 ORTHO05D008380 2.7e-61 239.2 197 58.4
DCAR_012008 Daucus carota HOM05D006529 ORTHO05D008380 1.4e-60 236.9 186 59.1
CSS0046887 Camellia sinensis var. sinensis HOM05D006529 ORTHO05D008380 6.7e-60 234.6 186 61.8
MSTRG.10586 Avicennia marina HOM05D006529 ORTHO05D008380 2.6e-59 232.6 200 58.0
HanXRQChr09g0238511 Helianthus annuus HOM05D006529 ORTHO05D008380 3.7e-58 228.8 186 58.6
Aqoxy199s004 Aquilegia oxysepala HOM05D006529 ORTHO05D008380 6.3e-58 228.0 190 57.4
PSO832G0687 Papaver somniferum HOM05D006529 ORTHO05D008380 2.4e-57 226.1 199 57.3
CDE05G3131 Ceratophyllum demersum HOM05D006529 ORTHO05D008380 3.1e-57 225.7 195 54.9
Migut.K00572 Erythranthe guttata HOM05D006529 ORTHO05D008380 2.7e-56 222.6 201 57.2
Oeu052123.2 Olea europaea HOM05D006529 ORTHO05D008380 3.5e-56 222.2 224 52.2
PSO063G6648 Papaver somniferum HOM05D006529 ORTHO05D008380 1.0e-55 220.7 197 56.9
SGA_v2.0_scaffold210G42089 Striga asiatica HOM05D006529 ORTHO05D008380 5.5e-54 214.9 191 57.1
TPR.G17281 Trifolium pratense HOM05D006529 ORTHO05D008380 4.7e-53 211.8 141 64.5
SalBow1G6632 Salvia bowleyana HOM05D006529 ORTHO05D008380 1.5e-51 206.8 231 48.1
Os01g0559300 Oryza sativa ssp. japonica HOM05D006529 ORTHO05D008380 9.1e-49 197.6 170 55.9
FAN26G1500 Fragaria x ananassa HOM05D006529 ORTHO05D008380 1.1e-46 190.7 212 50.9
Zm00001eb356780 Zea mays HOM05D006529 ORTHO05D008380 1.2e-45 187.2 165 52.7
CANSAT56G3512 Cannabis sativa HOM05D006529 ORTHO05D008380 3.6e-45 185.7 178 50.6
Peaxi162Scf00883g01013 Petunia axillaris HOM05D006529 ORTHO05D008380 4.7e-45 185.3 208 48.6
Lsat_1_v5_gn_7_38121 Lactuca sativa HOM05D006529 ORTHO05D008380 2.8e-42 176.0 178 50.0
Cpa.g.sc78.59 Carica papaya HOM05D006529 ORTHO05D008380 3.5e-40 169.1 190 49.5
Aa31LG3G600 Aethionema arabicum HOM05D006529 ORTHO05D008380 5.6e-38 161.8 164 54.3
Sc18g0001790 Simmondsia chinensis HOM05D006529 ORTHO05D008380 4.0e-36 155.6 147 55.8
FAN26G3434 Fragaria x ananassa HOM05D006529 ORTHO05D008380 7.8e-32 141.4 131 50.4
SalBow1G6389 Salvia bowleyana HOM05D006529 ORTHO05D008380 3.0e-31 139.4 135 48.9
HanXRQChr03g0061021 Helianthus annuus HOM05D006529 ORTHO05D008380 1.8e-28 130.2 108 55.6
SHI02792 Sapria himalayana HOM05D006529 ORTHO05D008380 4.9e-26 122.1 114 50.9
SMO164G0011 Selaginella moellendorffii HOM05D006529 ORTHO05D008380 1.4e-25 120.6 164 36.6
Lalb_Chr09g0331701 Lupinus albus HOM05D006529 ORTHO05D008380 1.1e-22 110.9 66 68.2
Sabra06G0122000 Salix brachista HOM05D006529 ORTHO05D008380 2.1e-21 106.7 102 58.8
CBR_g10883 Chara braunii HOM05D006529 ORTHO05D008380 4.4e-19 99.0 177 32.8
FAN27G1398 Fragaria x ananassa HOM05D006529 ORTHO05D008380 9.9e-19 97.8 87 57.5
Sabra06G0121800 Salix brachista HOM05D006529 ORTHO05D008380 1.3e-18 97.4 56 73.2
HPP92_005506 Vanilla planifolia HOM05D006529 ORTHO05D008380 2.4e-17 93.2 160 36.2
Nitab4.5_0009098g0020 Nicotiana tabacum HOM05D006529 ORTHO05D008380 1.3e-15 87.4 93 54.8
SHI02791 Sapria himalayana HOM05D006529 ORTHO05D008380 1.8e-12 77.0 63 52.4
RcHm_v2.0_Chr7g0226351 Rosa chinensis HOM05D006529 ORTHO05D008380 9.2e-09 64.7 54 63.0
Lalb_Chr09g0331711 Lupinus albus HOM05D006529 ORTHO05D008380 2.7e-08 63.2 45 64.4
HanXRQChr03g0061031 Helianthus annuus HOM05D006529 ORTHO05D008380 3.5e-08 62.8 72 48.6
Sopen08g011810 Solanum pennellii HOM05D006529 ORTHO05D008380 3.0e-07 59.7 45 51.1
Glyma.05G224100 Glycine max HOM05D006529 ORTHO05D008380 3.9e-07 59.3 30 76.7
Solyc08g041690.1 Solanum lycopersicum HOM05D006529 ORTHO05D008380 3.9e-07 59.3 36 63.9
Cre11.g467752 Chlamydomonas reinhardtii HOM05D006529 ORTHO05D008380 5.1e-07 58.9 195 26.2
FAN02G1845 Fragaria x ananassa HOM05D000599 ORTHO05D000554 9.6e-06 54.7 95 35.8


User provided reference genes

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