Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 8.7e-105 383.6 194 100.0
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.1e-104 383.3 194 99.5
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.9e-99 365.9 194 93.8
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.5e-93 346.3 194 90.2
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.5e-93 346.3 194 89.7
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 7.7e-93 344.0 194 89.2
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.7e-92 342.8 197 87.8
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 3.8e-92 341.7 194 87.1
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 5.0e-92 341.3 194 89.2
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 6.5e-92 340.9 194 89.2
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.4e-91 339.7 197 87.8
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 2.7e-90 335.5 194 88.7
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 3.6e-90 335.1 198 85.4
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 4.6e-90 334.7 194 86.1
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 4.6e-90 334.7 201 85.1
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 6.1e-90 334.3 194 87.6
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 7.9e-90 334.0 193 86.5
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.8e-89 332.8 201 86.1
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 3.9e-89 331.6 194 88.1
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 5.1e-89 331.3 196 86.7
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 6.7e-89 330.9 194 86.1
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 6.7e-89 330.9 197 85.8
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.1e-88 330.1 194 86.1
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 1.1e-88 330.1 194 86.6
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.5e-88 329.7 201 84.1
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.5e-88 329.7 201 84.1
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.5e-88 329.7 197 86.3
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.5e-88 329.7 194 88.7
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.0e-88 329.3 194 87.1
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.5e-88 328.9 194 85.1
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 4.3e-88 328.2 194 85.1
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 5.7e-88 327.8 194 85.6
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.3e-87 326.6 195 86.2
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.7e-87 326.2 194 86.1
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.7e-87 326.2 194 85.1
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.7e-87 326.2 198 83.3
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.2e-87 325.9 194 85.1
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.2e-87 325.9 201 82.6
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.2e-87 325.9 194 86.1
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 3.7e-87 325.1 201 84.1
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 6.3e-87 324.3 194 83.0
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 8.2e-87 323.9 197 83.8
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 8.2e-87 323.9 201 82.6
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 8.2e-87 323.9 194 81.4
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.4e-86 322.4 196 83.2
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 3.1e-86 322.0 194 85.1
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.1e-86 321.6 198 82.8
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 6.9e-86 320.9 194 84.5
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 6.9e-86 320.9 194 80.9
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 6.9e-86 320.9 194 81.4
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.2e-85 320.1 199 80.4
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.5e-85 319.7 194 82.0
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 2.0e-85 319.3 194 83.0
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.0e-85 319.3 194 83.0
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.4e-85 318.5 198 81.3
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 4.5e-85 318.2 197 81.2
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.5e-85 318.2 194 81.4
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.5e-85 318.2 194 81.4
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 7.7e-85 317.4 192 81.2
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.7e-85 317.4 195 84.1
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.7e-85 317.4 194 83.5
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.7e-85 317.4 194 83.0
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.0e-84 317.0 194 82.5
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.0e-84 317.0 194 82.5
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.3e-84 316.6 194 82.0
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.2e-84 315.8 201 78.6
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.2e-84 315.8 200 80.5
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.2e-84 315.8 196 82.7
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 3.8e-84 315.1 194 81.4
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 3.8e-84 315.1 193 82.9
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 5.0e-84 314.7 194 81.4
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.1e-83 313.5 198 81.8
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 82.0
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 83.0
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.9e-83 312.8 194 82.0
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.5e-83 312.4 194 81.4
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 3.2e-83 312.0 199 78.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 3.2e-83 312.0 199 78.9
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 3.2e-83 312.0 196 81.1
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.2e-83 312.0 194 81.4
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.2e-83 312.0 201 78.1
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 4.2e-83 311.6 199 78.4
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.2e-83 310.8 202 78.2
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 9.4e-83 310.5 203 77.3
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.6e-82 309.7 201 77.1
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.1e-82 309.3 206 76.7
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 2.7e-82 308.9 199 78.4
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 6.1e-82 307.8 199 77.9
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.9e-82 307.4 210 76.7
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.8e-81 306.2 203 77.8
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 3.0e-81 305.4 199 77.4
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 6.7e-81 304.3 199 77.4
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 6.7e-81 304.3 199 77.4
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 8.8e-81 303.9 198 78.3
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 8.8e-81 303.9 194 79.9
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.5e-80 303.1 199 77.9
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.5e-80 303.1 199 77.9
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 2.0e-80 302.8 199 76.9
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 2.0e-80 302.8 194 79.9
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 3.3e-80 302.0 217 72.4
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 3.3e-80 302.0 204 74.5
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 5.7e-80 301.2 194 79.4
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 7.4e-80 300.8 199 78.4
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 9.7e-80 300.4 200 77.5
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.7e-79 299.7 186 82.3
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 2.8e-79 298.9 200 77.5
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 3.7e-79 298.5 175 86.3
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 4.8e-79 298.1 196 76.0
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 6.3e-79 297.7 194 79.4
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.8e-78 296.2 199 75.4
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 4.1e-78 295.0 183 82.5
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 5.3e-78 294.7 198 75.8
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 9.1e-78 293.9 223 70.4
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 1.2e-77 293.5 198 77.3
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 2.0e-77 292.7 243 66.7
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 2.6e-77 292.4 200 76.5
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 5.9e-77 291.2 176 84.7
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.5e-75 286.6 200 71.5
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.9e-75 286.2 183 80.9
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.9e-75 286.2 200 71.5
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 2.5e-75 285.8 192 72.4
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 4.2e-75 285.0 205 72.7
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 9.4e-75 283.9 193 70.5
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.2e-74 283.5 175 80.6
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 1.4e-73 280.0 215 69.8
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 3.0e-73 278.9 214 69.6
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 4.0e-73 278.5 201 73.1
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 6.7e-73 277.7 194 74.7
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 2.0e-72 276.2 180 77.8
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 9.7e-72 273.9 189 73.0
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.3e-71 273.5 192 68.2
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.7e-71 273.1 205 71.7
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 3.7e-71 271.9 213 69.5
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 9.1e-70 267.3 187 76.5
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.0e-68 263.8 187 70.1
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 2.9e-68 262.3 185 69.7
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 6.5e-68 261.2 237 62.4
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 5.5e-67 258.1 182 73.1
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 8.8e-65 250.8 180 69.4
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 1.2e-64 250.4 198 63.6
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.8e-62 243.0 194 66.0
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 5.4e-62 241.5 177 71.8
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 3.2e-59 232.3 201 63.2
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.0e-57 227.3 153 77.1
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.6e-51 204.9 117 89.7
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.3e-47 193.7 116 81.9
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.2e-45 187.2 177 59.3
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 3.5e-45 185.7 95 100.0
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.6e-42 176.8 99 90.9
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 9.8e-40 167.5 99 85.9
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.2e-39 166.4 80 100.0
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 7.0e-38 161.4 188 53.7
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 6.0e-37 158.3 97 79.4
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 9.2e-30 134.4 70 95.7
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 2.7e-29 132.9 97 71.1
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 2.3e-28 129.8 197 45.7
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.1e-27 127.5 98 69.4
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.5e-27 126.3 70 78.6
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 4.4e-24 115.5 190 38.9
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 8.4e-23 111.3 194 39.7
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 2.4e-22 109.8 99 62.6
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.2e-21 107.5 71 77.5
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.9e-19 100.1 194 40.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 2.1e-18 96.7 65 73.8
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 4.7e-18 95.5 71 66.2
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 4.0e-17 92.4 194 38.1
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.2e-16 90.9 62 69.4
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 3.2e-14 82.8 62 69.4
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.6e-13 80.5 51 78.4
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.1e-13 80.1 167 34.7
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.7e-13 79.7 53 75.5
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.2e-08 64.3 72 51.4
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.1e-06 57.8 57 59.6


User provided reference genes

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