Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 7.6e-132 473.8 230 100.0
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 2.3e-56 223.0 117 89.7
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 8.0e-49 198.0 119 77.3
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 5.4e-45 185.3 116 72.4
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.2e-44 184.1 112 73.2
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 1.2e-44 184.1 116 71.6
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 2.1e-44 183.3 119 69.7
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 2.1e-44 183.3 120 68.3
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.7e-44 183.0 195 58.5
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 1.0e-43 181.0 120 68.3
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.3e-43 180.6 115 69.6
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.5e-42 177.2 120 68.3
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.9e-42 176.8 118 70.3
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.9e-42 176.8 118 70.3
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 1.9e-42 176.8 119 67.2
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 5.6e-42 175.3 108 72.2
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 4.7e-41 172.2 118 69.5
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.1e-40 171.0 105 71.4
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 1.4e-40 170.6 110 72.7
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 1.4e-40 170.6 119 65.5
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.8e-40 170.2 110 69.1
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 3.1e-40 169.5 109 69.7
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 4.0e-40 169.1 119 68.1
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.2e-39 167.5 116 69.0
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.5e-39 167.2 110 70.0
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 2.6e-39 166.4 124 63.7
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 2.6e-39 166.4 101 71.3
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 2.9e-38 162.9 126 58.7
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 6.4e-38 161.8 121 65.3
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.4e-37 160.6 121 63.6
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.4e-37 160.6 104 69.2
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.4e-37 160.6 117 65.8
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.9e-37 160.2 134 61.2
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 2.4e-37 159.8 133 57.1
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 5.4e-37 158.7 119 62.2
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 7.1e-37 158.3 101 64.4
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.6e-36 155.6 104 68.3
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 7.8e-36 154.8 106 61.3
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 7.8e-36 154.8 106 61.3
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 1.0e-35 154.5 102 68.6
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 3.0e-35 152.9 109 67.0
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 3.9e-35 152.5 109 66.1
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 8.6e-35 151.4 112 64.3
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.1e-34 151.0 108 63.9
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.5e-34 150.6 104 67.3
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 3.3e-34 149.4 105 64.8
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 4.3e-34 149.1 106 63.2
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 4.3e-34 149.1 199 47.7
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 7.3e-34 148.3 117 59.0
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 1.2e-33 147.5 104 62.5
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.2e-33 147.5 110 64.5
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.2e-33 147.5 91 73.6
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 1.6e-33 147.1 135 56.3
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.1e-33 146.7 116 64.7
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 3.6e-33 146.0 91 65.9
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.1e-32 144.4 104 62.5
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.1e-32 144.4 104 62.5
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.4e-32 144.1 110 64.5
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 1.8e-32 143.7 104 62.5
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 2.4e-32 143.3 105 61.9
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 4.0e-32 142.5 105 61.0
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.2e-32 142.1 97 70.1
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.2e-32 142.1 110 64.5
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 6.8e-32 141.7 109 66.1
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.2e-31 141.0 98 69.4
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 2.0e-31 140.2 117 56.4
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 2.0e-31 140.2 115 56.5
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 7.6e-31 138.3 109 61.5
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 7.6e-31 138.3 109 61.5
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 7.6e-31 138.3 134 50.7
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 7.6e-31 138.3 134 50.7
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 9.9e-31 137.9 100 63.0
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 1.3e-30 137.5 168 47.0
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.3e-30 137.5 106 62.3
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 1.7e-30 137.1 173 44.5
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 2.2e-30 136.7 89 70.8
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.2e-30 136.7 118 56.8
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 2.9e-30 136.3 90 65.6
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 4.9e-30 135.6 105 61.9
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 8.4e-30 134.8 104 59.6
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 1.1e-29 134.4 105 61.0
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 1.1e-29 134.4 105 61.0
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 1.1e-29 134.4 108 60.2
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.4e-29 134.0 98 66.3
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 1.9e-29 133.7 100 63.0
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 4.2e-29 132.5 102 62.7
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 5.4e-29 132.1 98 65.3
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 5.4e-29 132.1 115 59.1
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 9.2e-29 131.3 119 59.7
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 3.5e-28 129.4 89 68.5
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 4.6e-28 129.0 89 64.0
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.3e-27 127.5 110 56.4
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.7e-27 127.1 137 49.6
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 1.7e-27 127.1 80 76.2
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.7e-27 127.1 106 55.7
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.1e-26 124.4 90 62.2
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 1.5e-26 124.0 104 58.7
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 4.3e-26 122.5 90 60.0
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 4.3e-26 122.5 108 53.7
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 1.3e-25 120.9 92 60.9
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.3e-25 120.9 92 60.9
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.6e-25 120.6 77 71.4
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 2.4e-24 116.7 106 51.9
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 3.1e-24 116.3 83 68.7
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 4.0e-24 115.9 75 73.3
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 9.0e-24 114.8 83 68.7
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.3e-22 110.9 109 50.5
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 3.8e-22 109.4 122 45.9
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 1.1e-21 107.8 99 56.6
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.2e-21 106.3 72 73.6
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 9.3e-21 104.8 64 70.3
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.6e-20 104.0 80 56.2
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 2.1e-20 103.6 101 51.5
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.0e-19 101.3 110 45.5
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.7e-19 100.5 67 74.6
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 2.3e-19 100.1 100 47.0
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 3.0e-19 99.8 93 51.6
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.0e-19 99.8 68 73.5
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 3.9e-19 99.4 77 62.3
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 5.1e-19 99.0 62 71.0
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.5e-18 97.4 80 50.0
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 3.6e-17 92.8 121 43.0
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 6.2e-17 92.0 121 43.8
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 8.1e-17 91.7 88 56.8
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 4.0e-16 89.4 72 54.2
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 6.9e-16 88.6 224 34.8
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 6.9e-16 88.6 224 34.8
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 9.0e-16 88.2 91 47.3
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 9.0e-16 88.2 67 62.7
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.6e-15 86.7 195 36.4
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 4.5e-15 85.9 65 61.5
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.2e-14 83.6 62 69.4
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 2.9e-14 83.2 64 70.3
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 3.8e-14 82.8 200 34.0
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 4.9e-14 82.4 72 55.6
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 6.4e-14 82.0 60 71.7
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 2.4e-13 80.1 123 40.7
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 4.2e-13 79.3 66 65.2
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 4.2e-13 79.3 108 44.4
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 5.4e-13 79.0 107 41.1
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 5.4e-13 79.0 49 81.6
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 7.1e-13 78.6 65 56.9
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 7.1e-13 78.6 97 45.4
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 1.2e-12 77.8 71 53.5
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.6e-12 77.4 77 53.2
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 2.1e-12 77.0 87 46.0
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 3.5e-12 76.3 47 76.6
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 4.6e-12 75.9 42 85.7
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 1.3e-11 74.3 81 49.4
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.8e-11 73.9 50 76.0
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 1.8e-11 73.9 80 51.2
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.8e-11 73.9 42 83.3
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 3.0e-11 73.2 42 85.7
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 3.9e-11 72.8 42 78.6
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 5.1e-11 72.4 41 80.5
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 5.1e-11 72.4 53 62.3
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.9e-10 70.5 66 47.0
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 5.6e-10 68.9 68 60.3
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 9.6e-10 68.2 123 35.0
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 2.8e-09 66.6 37 83.8
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 4.8e-09 65.9 117 37.6
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 6.2e-09 65.5 53 54.7
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 8.1e-09 65.1 37 81.1
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.4e-08 64.3 97 40.2
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 4.0e-08 62.8 50 50.0
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 5.3e-08 62.4 95 36.8
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 1.2e-07 61.2 38 71.1
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.0e-06 58.2 37 73.0
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 1.3e-06 57.8 52 53.8
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 4.9e-06 55.8 94 35.1
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 6.4e-06 55.5 41 65.9


User provided reference genes

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