Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 4.0e-128 461.5 233 100.0
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 2.0e-124 449.1 233 98.3
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 1.7e-123 446.0 233 96.1
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 6.5e-123 444.1 233 96.1
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 3.2e-114 415.2 231 88.7
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 1.2e-113 413.3 238 86.6
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 1.2e-113 413.3 233 86.7
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.2e-113 413.3 233 86.7
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.6e-113 412.9 233 86.3
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.6e-113 412.9 233 86.3
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 2.8e-113 412.1 234 86.8
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.6e-113 411.8 233 86.3
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.6e-113 411.8 233 85.8
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 3.6e-113 411.8 234 87.2
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 4.7e-113 411.4 236 86.0
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 6.1e-113 411.0 231 88.3
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 6.1e-113 411.0 234 87.2
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 6.1e-113 411.0 231 87.9
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 1.0e-112 410.2 241 84.2
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 2.3e-112 409.1 233 86.3
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 2.3e-112 409.1 233 91.8
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 2.3e-112 409.1 228 88.6
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 3.0e-112 408.7 233 85.0
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 4.0e-112 408.3 236 86.0
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 5.2e-112 407.9 239 85.8
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 6.8e-112 407.5 231 86.1
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 1.5e-111 406.4 236 85.6
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.3e-110 403.3 234 86.8
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.3e-110 403.3 233 85.4
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 2.2e-110 402.5 233 84.1
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 2.8e-110 402.1 231 85.7
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.8e-110 402.1 237 84.0
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 2.8e-110 402.1 232 85.3
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 4.9e-110 401.4 233 85.8
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 6.3e-110 401.0 239 83.7
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 6.3e-110 401.0 238 84.5
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 6.3e-110 401.0 239 84.1
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 1.1e-109 400.2 234 85.0
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 1.4e-109 399.8 239 83.7
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 3.1e-109 398.7 233 84.5
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 3.1e-109 398.7 240 83.3
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 5.4e-109 397.9 233 84.1
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 5.4e-109 397.9 236 84.3
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 7.0e-109 397.5 233 83.3
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 9.2e-109 397.1 233 83.3
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 1.6e-108 396.4 234 84.6
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 1.6e-108 396.4 233 84.5
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 2.7e-108 395.6 233 81.5
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 2.7e-108 395.6 231 83.1
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 1.0e-107 393.7 233 82.4
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 1.3e-107 393.3 235 84.7
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 2.9e-107 392.1 248 80.6
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 1.1e-106 390.2 224 83.9
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 1.1e-106 390.2 224 83.9
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 1.1e-106 390.2 224 83.0
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 2.5e-106 389.0 233 81.5
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 9.5e-106 387.1 233 81.1
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 1.2e-105 386.7 233 82.0
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 2.1e-105 386.0 224 82.1
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 3.6e-105 385.2 240 78.8
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 8.0e-105 384.0 231 81.8
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 1.0e-104 383.6 224 81.2
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 1.8e-104 382.9 233 81.1
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 2.3e-104 382.5 233 81.5
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 4.0e-104 381.7 240 77.9
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 4.0e-104 381.7 233 80.3
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 5.2e-104 381.3 236 80.1
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 5.2e-104 381.3 233 81.5
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 8.9e-104 380.6 238 79.0
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 8.9e-104 380.6 233 80.7
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 4.4e-103 378.3 233 79.4
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 4.4e-103 378.3 236 79.2
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 5.7e-103 377.9 233 79.4
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 5.7e-103 377.9 237 80.2
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 9.8e-103 377.1 239 77.0
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 1.3e-102 376.7 234 80.3
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 3.7e-102 375.2 233 78.5
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 1.1e-101 373.6 233 81.5
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 4.1e-101 371.7 240 75.8
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 7.0e-101 370.9 233 77.7
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 9.2e-101 370.5 240 77.9
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 1.2e-100 370.2 233 77.7
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.6e-100 369.8 234 76.9
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 2.7e-100 369.0 227 79.7
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 4.6e-100 368.2 233 77.3
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 7.8e-100 367.5 233 75.5
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 7.8e-100 367.5 233 75.5
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 7.8e-100 367.5 233 76.4
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 1.0e-99 367.1 233 75.1
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 1.0e-99 367.1 234 76.1
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 1.0e-99 367.1 223 78.9
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 2.3e-99 365.9 231 77.1
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 3.0e-99 365.5 233 76.8
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 3.0e-99 365.5 231 77.9
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 3.0e-99 365.5 234 76.1
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 3.0e-99 365.5 233 76.4
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 1.5e-98 363.2 228 76.3
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 2.5e-98 362.5 234 79.9
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 9.5e-98 360.5 224 78.6
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 1.6e-97 359.8 228 76.8
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 1.6e-97 359.8 238 75.6
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 1.4e-96 356.7 233 76.0
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 2.3e-96 355.9 325 60.3
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 6.8e-96 354.4 217 78.8
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 1.2e-95 353.6 217 77.0
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 2.9e-94 349.0 257 67.7
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 4.9e-94 348.2 304 60.9
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 4.1e-93 345.1 240 74.6
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 2.0e-92 342.8 201 85.6
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 2.7e-92 342.4 230 72.6
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 4.6e-92 341.7 187 89.3
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 6.0e-92 341.3 233 73.8
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 3.3e-90 335.5 223 69.1
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 5.2e-88 328.2 233 70.4
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 1.3e-86 323.6 233 68.7
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 4.9e-86 321.6 238 72.3
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 8.3e-86 320.9 233 67.4
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 2.4e-85 319.3 192 79.7
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 1.2e-84 317.0 192 79.2
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 5.1e-83 311.6 198 75.8
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 6.6e-83 311.2 223 65.9
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 6.6e-83 311.2 223 65.5
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 3.3e-82 308.9 228 64.9
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 4.3e-82 308.5 198 77.8
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 2.4e-72 276.2 197 69.0
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 4.4e-71 271.9 168 76.2
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 2.3e-67 259.6 160 78.8
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.8e-64 250.0 227 59.5
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 1.8e-56 223.4 157 66.2
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 1.4e-53 213.8 217 50.2
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 2.7e-44 183.0 119 72.3
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 5.9e-39 165.2 105 80.0
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 5.7e-34 148.7 200 36.0
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 6.9e-32 141.7 97 76.3
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 1.0e-22 111.3 159 36.5
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 1.7e-09 67.4 41 65.9


User provided reference genes

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