Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 5.1e-212 740.7 351 100.0
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 6.3e-186 654.1 351 89.5
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 2.7e-181 638.6 323 92.0
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 4.8e-170 601.3 351 83.2
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 6.0e-104 381.7 291 64.9
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 8.7e-103 377.9 344 57.6
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 2.5e-102 376.3 220 78.2
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 5.6e-102 375.2 219 79.9
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 7.3e-102 374.8 266 68.0
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 1.3e-101 374.0 217 80.2
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 2.8e-101 372.9 351 56.4
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 1.8e-100 370.2 217 79.3
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 3.1e-100 369.4 216 78.2
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.1e-100 369.4 249 70.7
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 3.1e-100 369.4 249 70.7
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 4.0e-100 369.0 217 78.8
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 4.0e-100 369.0 249 70.3
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 6.9e-100 368.2 298 61.7
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 6.9e-100 368.2 221 75.1
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 6.9e-100 368.2 248 72.2
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 1.2e-99 367.5 296 63.9
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 1.2e-99 367.5 299 62.5
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 1.5e-99 367.1 357 55.7
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 2.0e-99 366.7 267 66.3
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 2.6e-99 366.3 247 72.1
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 2.6e-99 366.3 247 69.6
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 2.6e-99 366.3 217 78.3
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 2.6e-99 366.3 210 79.0
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 2.6e-99 366.3 220 76.4
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 3.4e-99 365.9 215 79.5
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 4.4e-99 365.5 220 75.9
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 4.4e-99 365.5 214 78.5
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 7.6e-99 364.8 323 57.6
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 9.9e-99 364.4 245 71.8
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 9.9e-99 364.4 214 78.5
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 1.7e-98 363.6 207 79.7
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 2.2e-98 363.2 220 76.4
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 4.9e-98 362.1 318 59.1
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 8.4e-98 361.3 217 76.5
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 1.1e-97 360.9 206 79.6
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 1.1e-97 360.9 285 63.9
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 3.2e-97 359.4 215 77.2
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 4.2e-97 359.0 228 73.2
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 4.2e-97 359.0 276 64.9
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 5.4e-97 358.6 290 64.8
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 7.1e-97 358.2 204 79.4
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 9.3e-97 357.8 223 75.3
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 9.3e-97 357.8 215 77.7
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 1.2e-96 357.5 296 62.2
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 1.6e-96 357.1 219 76.7
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 2.1e-96 356.7 236 70.3
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 3.5e-96 355.9 213 77.9
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 3.5e-96 355.9 287 62.4
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 4.6e-96 355.5 215 78.1
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 6.0e-96 355.1 216 76.4
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 7.8e-96 354.8 260 66.9
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.0e-95 354.4 296 59.8
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 1.0e-95 354.4 228 72.4
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 1.3e-95 354.0 285 62.8
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.3e-95 354.0 292 61.0
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 1.7e-95 353.6 217 75.6
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 2.3e-95 353.2 218 72.9
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 2.3e-95 353.2 217 75.6
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 2.3e-95 353.2 206 78.2
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 3.0e-95 352.8 215 76.3
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 3.9e-95 352.4 204 80.4
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 6.6e-95 351.7 200 82.0
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 6.6e-95 351.7 213 77.0
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 1.5e-94 350.5 215 76.3
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.9e-94 350.1 219 73.1
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 1.9e-94 350.1 284 62.0
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.9e-94 350.1 215 75.8
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 4.3e-94 349.0 209 76.1
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 4.3e-94 349.0 201 79.6
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 5.6e-94 348.6 237 70.9
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 7.3e-94 348.2 209 76.1
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 7.3e-94 348.2 209 76.1
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 7.3e-94 348.2 217 72.4
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 9.6e-94 347.8 206 78.2
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 9.6e-94 347.8 254 65.4
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 9.6e-94 347.8 254 65.4
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 9.6e-94 347.8 209 76.1
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 9.6e-94 347.8 237 70.0
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 1.6e-93 347.1 236 68.2
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 2.1e-93 346.7 218 74.3
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 4.8e-93 345.5 216 74.1
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 4.8e-93 345.5 209 75.6
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 6.2e-93 345.1 215 74.9
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 1.1e-92 344.4 206 77.2
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 1.1e-92 344.4 206 77.2
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 1.1e-92 344.4 215 75.3
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 3.1e-92 342.8 215 74.0
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 4.0e-92 342.4 216 74.1
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 1.5e-91 340.5 215 74.0
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 2.0e-91 340.1 209 73.7
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 2.0e-91 340.1 194 81.4
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 2.6e-91 339.7 211 74.9
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 3.4e-91 339.3 237 69.6
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 3.4e-91 339.3 206 76.7
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 3.4e-91 339.3 206 76.7
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 1.3e-90 337.4 206 75.7
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 1.7e-90 337.0 195 78.5
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 2.9e-90 336.3 261 60.2
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 4.9e-90 335.5 206 75.7
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 6.4e-90 335.1 195 78.5
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 8.4e-90 334.7 253 62.8
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 5.4e-89 332.0 230 68.3
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 7.1e-89 331.6 219 71.7
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.2e-88 330.9 230 68.3
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 3.5e-88 329.3 204 72.5
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 8.7e-87 324.7 211 71.6
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 8.7e-87 324.7 208 72.1
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 4.3e-86 322.4 388 47.4
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 3.4e-83 312.8 212 67.9
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 5.8e-83 312.0 280 55.7
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 7.6e-83 311.6 204 67.6
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.4e-81 307.4 205 68.3
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 5.7e-78 295.4 217 65.4
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 7.1e-73 278.5 198 61.1
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 4.6e-72 275.8 197 62.4
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 3.0e-71 273.1 162 75.9
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 8.2e-69 265.0 277 50.5
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 2.4e-68 263.5 162 73.5
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 6.9e-68 261.9 160 74.4
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 6.5e-66 255.4 223 60.5
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 4.6e-64 249.2 151 74.2
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 3.9e-63 246.1 141 80.1
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 4.8e-61 239.2 144 75.7
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 6.5e-58 228.8 201 54.7
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 2.9e-50 203.4 122 73.0
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 1.6e-48 197.6 153 62.7
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 1.7e-45 187.6 152 60.5
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 2.8e-45 186.8 171 52.0
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.4e-31 141.4 113 54.9
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 4.7e-24 116.3 86 58.1
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 5.4e-20 102.8 90 58.9
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 2.7e-19 100.5 65 70.8
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 4.3e-17 93.2 132 43.2
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 4.7e-16 89.7 83 55.4
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 3.1e-15 87.0 59 69.5
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 1.2e-14 85.1 56 71.4
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.4e-12 78.2 45 73.3
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 3.5e-11 73.6 67 56.7
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 6.8e-07 59.3 38 65.8
Zm00001eb382840 Zea mays HOM05D003596 ORTHO05D004256 2.0e-06 57.8 49 55.1


User provided reference genes

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