Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 4.8e-135 484.6 255 100.0
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 3.4e-117 425.2 258 87.2
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 1.1e-110 403.7 257 84.0
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 6.1e-90 334.7 223 81.6
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 3.7e-79 298.9 260 60.4
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 2.7e-77 292.7 239 63.6
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 1.0e-76 290.8 251 62.2
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 1.6e-74 283.5 255 60.0
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 1.5e-72 276.9 262 59.5
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 1.3e-71 273.9 253 56.9
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.7e-71 273.5 251 59.4
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 6.3e-71 271.6 251 58.6
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 7.0e-70 268.1 221 60.6
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 2.7e-69 266.2 257 56.4
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.3e-68 263.8 280 53.9
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 1.7e-68 263.5 243 57.6
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 8.6e-68 261.2 242 56.2
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 8.6e-68 261.2 270 56.3
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 1.5e-67 260.4 257 56.0
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 6.8e-65 251.5 193 63.7
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 8.9e-65 251.1 255 52.2
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 8.9e-65 251.1 254 53.9
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 1.2e-64 250.8 237 53.6
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 1.7e-63 246.9 246 54.1
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 1.7e-63 246.9 275 49.8
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 3.7e-63 245.7 238 52.9
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 4.9e-63 245.4 225 53.8
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 3.2e-62 242.7 254 51.6
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 2.0e-61 240.0 250 50.4
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 4.6e-61 238.8 247 51.0
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 2.3e-60 236.5 203 55.2
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 6.6e-60 235.0 200 56.5
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 4.3e-59 232.3 200 52.5
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 1.6e-58 230.3 203 55.2
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 2.8e-58 229.6 238 49.6
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 4.7e-58 228.8 196 54.1
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 8.1e-58 228.0 192 57.8
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 1.1e-57 227.6 196 53.6
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 3.1e-57 226.1 248 48.4
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 4.0e-57 225.7 227 50.7
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 6.8e-57 224.9 227 49.3
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 2.0e-56 223.4 247 47.0
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 3.4e-56 222.6 262 48.1
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 9.8e-56 221.1 233 54.9
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 1.3e-55 220.7 256 48.4
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 1.7e-55 220.3 248 48.4
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 3.7e-55 219.2 233 48.5
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 3.7e-55 219.2 248 48.4
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 4.9e-55 218.8 250 48.8
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 6.4e-55 218.4 232 48.3
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 1.1e-54 217.6 265 49.4
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 2.4e-54 216.5 247 44.9
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 3.2e-54 216.1 231 48.1
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 3.2e-54 216.1 231 48.1
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 7.1e-54 214.9 204 50.0
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 9.2e-54 214.5 230 48.3
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 9.2e-54 214.5 226 48.7
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.6e-53 213.8 247 44.5
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 2.7e-53 213.0 182 55.5
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 2.7e-53 213.0 198 53.0
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 4.6e-53 212.2 210 48.1
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 7.8e-53 211.5 389 39.3
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 1.0e-52 211.1 236 46.2
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 1.3e-52 210.7 252 47.2
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 1.7e-52 210.3 238 45.8
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 3.0e-52 209.5 262 45.0
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 3.9e-52 209.1 255 44.3
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 1.1e-51 207.6 200 51.0
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 1.5e-51 207.2 249 42.6
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 7.3e-51 204.9 254 44.1
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 1.2e-50 204.1 258 42.6
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 2.1e-50 203.4 229 47.2
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 4.7e-50 202.2 215 48.8
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 8.1e-50 201.4 210 51.0
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 1.2e-48 197.6 252 44.0
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 2.6e-48 196.4 167 55.7
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 9.2e-46 188.0 228 46.1
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 1.2e-45 187.6 171 50.9
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 2.7e-45 186.4 235 43.8
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 6.0e-45 185.3 252 44.8
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 7.8e-45 184.9 166 51.2
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 1.3e-44 184.1 160 53.1
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 1.3e-44 184.1 230 44.3
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 3.9e-44 182.6 167 51.5
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 3.6e-42 176.0 252 41.7
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 1.1e-41 174.5 197 46.2
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 1.2e-40 171.0 204 43.6
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 1.2e-40 171.0 169 51.5
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 2.2e-39 166.8 166 51.2
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 2.9e-39 166.4 324 36.4
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 2.1e-37 160.2 197 44.2
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 5.1e-36 155.6 158 48.7
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 1.5e-35 154.1 136 52.9
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 5.4e-30 135.6 121 53.7
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 7.1e-30 135.2 235 37.4
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.9e-27 127.1 177 42.4
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 1.3e-26 124.4 93 65.6
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 1.9e-22 110.5 188 33.0
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.3e-20 104.4 172 39.5
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 1.8e-20 104.0 88 61.4
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 2.1e-18 97.1 192 30.7
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 2.4e-17 93.6 123 49.6
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 6.9e-17 92.0 185 30.3
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.2e-16 91.3 81 51.9
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 4.2e-14 82.8 224 26.3
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 5.5e-14 82.4 185 28.1
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 9.3e-14 81.6 223 25.6
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 2.7e-13 80.1 182 26.9
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 6.0e-13 79.0 182 25.8
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 6.7e-12 75.5 189 24.9
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 6.7e-12 75.5 183 27.9
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 2.1e-10 70.5 228 24.1
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 4.8e-10 69.3 189 24.3
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 6.3e-10 68.9 99 38.4
CSS0038024 Camellia sinensis var. sinensis HOM05D003480 ORTHO05D001339 2.2e-07 60.5 42 69.0
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 5.0e-07 59.3 112 35.7
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 6.5e-07 58.9 96 37.5
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 2.5e-06 57.0 48 56.2
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 3.2e-06 56.6 89 38.2


User provided reference genes

Program Settings