Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 7.9e-166 587.0 295 100.0
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 5.9e-113 411.4 214 95.8
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 2.9e-112 409.1 214 95.3
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 3.2e-106 389.0 212 91.5
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 3.6e-102 375.6 212 88.2
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 3.1e-101 372.5 210 85.7
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 5.2e-101 371.7 212 84.0
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 3.4e-100 369.0 212 85.4
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 4.1e-98 362.1 211 83.4
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 2.1e-97 359.8 213 84.0
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 4.6e-97 358.6 218 80.3
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 1.7e-96 356.7 212 83.5
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.1e-96 355.1 212 81.1
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 6.6e-96 354.8 212 80.7
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.1e-95 354.0 212 80.7
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.5e-95 353.6 213 81.7
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.9e-95 353.2 212 80.2
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.6e-95 351.7 212 80.7
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 9.5e-95 350.9 212 79.7
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 1.2e-94 350.5 219 79.0
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 2.1e-94 349.7 212 81.6
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 2.8e-94 349.4 212 79.7
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 2.8e-94 349.4 214 79.9
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.8e-93 346.7 212 79.7
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 2.3e-93 346.3 207 80.2
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 6.8e-93 344.7 212 81.1
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 6.8e-93 344.7 213 79.8
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 6.8e-93 344.7 213 79.8
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 1.2e-92 344.0 226 77.4
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 2.6e-92 342.8 214 76.6
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 9.9e-92 340.9 217 76.0
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 1.3e-91 340.5 217 75.1
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.7e-91 340.1 212 77.8
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 2.2e-91 339.7 215 77.2
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 2.9e-91 339.3 208 80.3
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 4.9e-91 338.6 227 74.9
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 2.4e-90 336.3 213 77.9
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 3.2e-90 335.9 215 75.3
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 4.1e-90 335.5 213 77.5
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 4.1e-90 335.5 213 78.4
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 9.2e-90 334.3 213 75.6
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 9.2e-90 334.3 206 78.2
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 1.2e-89 334.0 213 77.9
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.2e-89 334.0 206 77.7
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 2.1e-89 333.2 215 74.0
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 2.1e-89 333.2 214 74.3
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 2.1e-89 333.2 211 77.7
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.1e-89 333.2 212 79.7
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 2.1e-89 333.2 238 71.4
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 3.5e-89 332.4 213 74.6
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 4.6e-89 332.0 210 77.1
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 4.6e-89 332.0 213 74.6
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 4.6e-89 332.0 212 79.7
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 6.0e-89 331.6 206 77.2
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.0e-88 330.9 210 77.1
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 1.0e-88 330.9 224 72.8
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 1.3e-88 330.5 211 72.0
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 1.7e-88 330.1 210 76.2
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 5.1e-88 328.6 228 69.3
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 5.1e-88 328.6 228 69.3
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.1e-87 327.4 213 74.6
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.1e-87 327.4 213 74.6
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 1.1e-87 327.4 209 74.6
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 1.5e-87 327.0 219 69.4
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 1.9e-87 326.6 212 73.6
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 1.9e-87 326.6 212 73.6
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 2.5e-87 326.2 224 73.2
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.5e-87 326.2 228 68.4
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 4.3e-87 325.5 206 76.7
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 7.3e-87 324.7 212 73.6
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 9.5e-87 324.3 212 78.3
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 9.5e-87 324.3 217 74.7
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 1.2e-86 323.9 218 72.5
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 1.2e-86 323.9 210 75.7
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 2.8e-86 322.8 212 74.1
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.8e-86 322.8 215 70.2
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 4.7e-86 322.0 208 73.1
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 4.7e-86 322.0 214 73.8
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 4.7e-86 322.0 214 71.0
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 4.7e-86 322.0 215 73.0
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 8.1e-86 321.2 212 73.6
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 1.1e-85 320.9 216 73.1
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.1e-85 320.9 213 73.2
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 1.8e-85 320.1 213 75.1
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.1e-85 319.3 212 73.1
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 6.8e-85 318.2 216 73.1
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 3.4e-84 315.8 214 73.8
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 3.4e-84 315.8 208 73.1
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 7.6e-84 314.7 213 70.4
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 9.9e-84 314.3 227 69.2
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 2.9e-83 312.8 209 71.8
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 4.9e-83 312.0 217 68.7
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 2.4e-82 309.7 212 70.8
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 7.8e-81 304.7 221 67.4
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 7.8e-81 304.7 213 69.5
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.3e-80 303.9 209 71.8
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 3.9e-80 302.4 313 54.6
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 5.1e-80 302.0 211 68.2
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 6.6e-80 301.6 210 68.1
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 1.1e-79 300.8 213 70.0
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 5.6e-79 298.5 205 71.2
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 7.3e-79 298.1 207 71.5
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 9.6e-79 297.7 212 68.4
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.2e-78 297.4 205 71.7
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 4.7e-78 295.4 207 71.5
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 8.1e-78 294.7 206 68.4
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.1e-77 294.3 345 49.6
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 1.4e-77 293.9 205 71.2
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 3.1e-77 292.7 205 70.7
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 4.0e-77 292.4 213 65.7
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 1.2e-76 290.8 228 65.8
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 3.4e-76 289.3 246 60.6
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 1.3e-75 287.3 210 65.7
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 4.9e-75 285.4 210 65.2
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 8.4e-75 284.6 205 68.8
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.9e-74 283.5 297 52.9
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 9.3e-74 281.2 172 82.0
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.2e-73 280.8 228 63.6
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 3.0e-72 276.2 216 61.6
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 5.6e-71 271.9 207 62.8
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 2.4e-69 266.5 208 59.6
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 2.6e-68 263.1 218 56.0
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.7e-67 260.4 221 60.2
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 8.7e-64 248.1 141 85.8
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 2.9e-59 233.0 140 80.7
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.9e-58 230.3 176 66.5
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 7.1e-58 228.4 140 77.9
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 9.3e-58 228.0 141 75.9
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 1.9e-55 220.3 140 77.1
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 4.8e-54 215.7 212 58.0
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 4.8e-54 215.7 163 67.5
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 4.6e-49 199.1 130 73.1
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 2.3e-48 196.8 110 88.2
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 5.7e-47 192.2 184 57.1
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 3.4e-44 183.0 96 89.6
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 4.5e-44 182.6 117 74.4
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 1.0e-43 181.4 101 87.1
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.7e-43 180.6 116 75.9
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 3.2e-42 176.4 153 62.1
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.0e-40 171.4 99 81.8
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.0e-40 171.4 99 81.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 4.3e-39 166.0 99 78.8
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 3.7e-38 162.9 118 70.3
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 9.1e-37 158.3 118 66.9
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 1.5e-31 141.0 182 39.0
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.7e-30 137.5 83 78.3
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 2.4e-29 133.7 128 61.7
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 7.0e-29 132.1 107 63.6
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 1.3e-22 111.3 81 69.1
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 8.8e-16 88.6 57 75.4
PRCOL_00002610 Prasinoderma coloniale HOM05D004698 ORTHO05D333686 1.6e-12 77.8 195 33.3
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 2.7e-12 77.0 47 80.9
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.2e-11 73.9 76 47.4
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 4.0e-08 63.2 48 66.7


User provided reference genes

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