Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 2.4e-104 382.1 185 100.0
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 1.3e-102 376.3 185 98.4
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 8.6e-102 373.6 185 97.3
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 8.9e-99 363.6 185 94.1
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 3.9e-94 348.2 185 87.0
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.9e-93 345.9 185 87.6
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 1.9e-93 345.9 185 88.1
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 2.5e-93 345.5 185 85.9
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 3.3e-93 345.1 185 87.6
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 9.5e-93 343.6 185 86.5
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 1.2e-92 343.2 185 87.6
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 1.2e-92 343.2 184 87.0
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 1.6e-92 342.8 182 87.4
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 1.6e-92 342.8 185 84.9
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 2.1e-92 342.4 185 85.9
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 2.1e-92 342.4 185 87.0
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 2.1e-92 342.4 185 86.5
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 6.2e-92 340.9 185 85.9
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 1.1e-91 340.1 185 84.9
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 1.8e-91 339.3 185 84.3
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 2.3e-91 339.0 185 84.9
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 2.3e-91 339.0 185 85.4
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 3.1e-91 338.6 185 84.9
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 4.0e-91 338.2 185 83.8
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 4.0e-91 338.2 185 84.3
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 4.0e-91 338.2 185 84.3
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 4.0e-91 338.2 185 84.9
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 5.2e-91 337.8 185 83.8
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 5.2e-91 337.8 185 86.5
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 6.8e-91 337.4 185 83.8
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 1.5e-90 336.3 185 84.9
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 1.5e-90 336.3 184 84.8
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 2.0e-90 335.9 185 85.9
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 2.0e-90 335.9 184 85.9
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 2.6e-90 335.5 185 84.9
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 5.8e-90 334.3 185 83.2
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 5.8e-90 334.3 185 83.2
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 5.8e-90 334.3 185 82.2
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 5.8e-90 334.3 185 82.2
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 5.8e-90 334.3 185 84.9
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 7.6e-90 334.0 185 84.3
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 1.3e-89 333.2 184 83.7
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 1.7e-89 332.8 174 89.1
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 2.2e-89 332.4 185 84.3
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 2.2e-89 332.4 185 82.7
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 4.9e-89 331.3 185 84.3
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 4.9e-89 331.3 185 84.9
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 6.4e-89 330.9 184 83.7
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 6.4e-89 330.9 184 83.7
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 6.4e-89 330.9 185 82.2
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 6.4e-89 330.9 184 84.8
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 8.4e-89 330.5 181 84.5
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 8.4e-89 330.5 181 84.5
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.1e-88 330.1 184 83.2
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 1.9e-88 329.3 178 86.0
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 1.9e-88 329.3 185 82.7
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 1.9e-88 329.3 185 81.6
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 2.4e-88 328.9 185 83.2
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 3.2e-88 328.6 185 81.6
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 4.1e-88 328.2 185 81.6
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 4.1e-88 328.2 184 83.2
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 5.4e-88 327.8 182 82.4
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 5.4e-88 327.8 185 82.7
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 5.4e-88 327.8 181 83.4
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 2.1e-87 325.9 185 82.2
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.1e-87 325.9 184 82.1
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 2.7e-87 325.5 182 84.6
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 3.5e-87 325.1 184 82.1
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 3.5e-87 325.1 184 82.6
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 3.5e-87 325.1 185 81.6
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 4.6e-87 324.7 184 81.0
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 6.0e-87 324.3 185 81.6
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 6.0e-87 324.3 184 82.6
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 7.8e-87 323.9 185 81.1
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 7.8e-87 323.9 184 81.5
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 1.0e-86 323.6 181 81.8
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 1.3e-86 323.2 181 81.8
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 1.7e-86 322.8 181 81.2
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 2.3e-86 322.4 181 81.8
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 3.0e-86 322.0 181 81.2
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 3.9e-86 321.6 181 81.2
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 3.9e-86 321.6 181 81.8
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 3.9e-86 321.6 184 80.4
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 3.9e-86 321.6 184 81.5
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 5.1e-86 321.2 184 81.5
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.1e-85 320.1 184 79.9
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 1.5e-85 319.7 181 81.2
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.9e-85 319.3 182 80.8
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 1.9e-85 319.3 182 80.8
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 3.3e-85 318.5 181 79.6
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 3.3e-85 318.5 181 80.7
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 3.3e-85 318.5 181 79.6
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 3.3e-85 318.5 181 79.6
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 7.3e-85 317.4 181 79.0
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 9.6e-85 317.0 181 79.0
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 2.1e-84 315.8 181 79.0
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 2.8e-84 315.5 185 76.2
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 4.7e-84 314.7 185 80.5
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.4e-83 313.2 172 84.3
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 2.4e-83 312.4 181 79.0
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 2.4e-83 312.4 181 79.0
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 3.1e-83 312.0 185 79.5
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 6.9e-83 310.8 185 78.9
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 1.3e-81 306.6 184 76.1
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 2.9e-81 305.4 183 80.9
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 1.9e-80 302.8 180 77.8
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 4.2e-80 301.6 185 77.3
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 1.2e-79 300.1 181 76.8
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 3.5e-79 298.5 185 75.7
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 1.3e-78 296.6 185 74.6
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 2.3e-78 295.8 181 75.7
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 6.6e-78 294.3 185 74.6
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 4.3e-77 291.6 173 77.5
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 4.3e-77 291.6 185 73.5
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 2.8e-76 288.9 185 71.9
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 2.8e-76 288.9 185 72.4
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 4.8e-76 288.1 185 72.4
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 8.1e-76 287.3 184 71.7
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.8e-75 286.2 181 73.5
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 3.9e-70 268.5 185 66.5
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 1.9e-61 239.6 181 54.7
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 5.8e-58 228.0 181 55.8
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 3.8e-57 225.3 187 55.6
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 6.0e-55 218.0 172 62.8
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 3.9e-54 215.3 177 52.0
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.5e-53 213.4 183 51.4
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 1.1e-51 207.2 175 52.6
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 1.6e-44 183.3 151 55.6
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 4.5e-42 175.3 180 50.6
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 8.8e-38 161.0 88 88.6
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 1.0e-33 147.5 172 47.1
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 3.5e-26 122.5 88 64.8
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 6.1e-23 111.7 155 35.5
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 6.3e-20 101.7 54 83.3
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 2.9e-09 66.2 88 38.6


User provided reference genes

Program Settings