Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G013130 Citrullus lanatus HOM05D002993 ORTHO05D003432 1.6e-42 175.6 86 100.0
MELO3C006835.2 Cucumis melo HOM05D002993 ORTHO05D003432 2.8e-10 68.6 42 78.6
Dinv22933 Davidia involucrata HOM05D002993 ORTHO05D003432 8.0e-10 67.0 42 78.6
ClCG05G007500 Citrullus lanatus HOM05D002993 ORTHO05D003432 1.4e-09 66.2 42 73.8
CsaV3_3G016360 Cucumis sativus L. HOM05D002993 ORTHO05D003432 1.4e-09 66.2 42 76.2
Sed0006203 Sechium edule HOM05D002993 ORTHO05D003432 1.4e-09 66.2 42 73.8
Ciclev10005783m.g Citrus clementina HOM05D002993 ORTHO05D003432 1.2e-08 63.2 39 74.4
EL10Ac3g05790 Beta vulgaris HOM05D002993 ORTHO05D003432 1.5e-08 62.8 39 76.9
QL12p039501 Quercus lobata HOM05D002993 ORTHO05D003432 1.5e-08 62.8 42 73.8
Haze_13824 Corylus avellana HOM05D002993 ORTHO05D003432 2.0e-08 62.4 44 72.7
PGR042G1339 Punica granatum HOM05D002993 ORTHO05D003432 2.6e-08 62.0 42 71.4
GSVIVG01018510001 Vitis vinifera HOM05D002993 ORTHO05D003432 4.4e-08 61.2 42 71.4
CSS0032928 Camellia sinensis var. sinensis HOM05D002993 ORTHO05D003432 5.7e-08 60.8 32 90.6
Eucgr.A02874 Eucalyptus grandis HOM05D002993 ORTHO05D003432 5.7e-08 60.8 42 71.4
Nn1g01209 Nelumbo nucifera HOM05D002993 ORTHO05D003432 5.7e-08 60.8 42 71.4
Cc02_g03870 Coffea canephora HOM05D002993 ORTHO05D003432 7.5e-08 60.5 57 57.9
Phvul.004G127000 Phaseolus vulgaris HOM05D002993 ORTHO05D003432 7.5e-08 60.5 80 47.5
MSTRG.8799 Avicennia marina HOM05D002993 ORTHO05D003432 9.8e-08 60.1 42 69.0
Sed0020988 Sechium edule HOM05D002993 ORTHO05D003432 9.8e-08 60.1 66 51.5
VMungo0464G1742 Vigna mungo HOM05D002993 ORTHO05D003432 9.8e-08 60.1 42 71.4
Atru.chr1.630 Acer truncatum HOM05D002993 ORTHO05D003432 1.3e-07 59.7 39 69.2
Cpa.g.sc3.268 Carica papaya HOM05D002993 ORTHO05D003432 1.3e-07 59.7 42 69.0
Cfa008232 Carpinus fangiana HOM05D002993 ORTHO05D003432 1.3e-07 59.7 45 71.1
AUR62043457 Chenopodium quinoa HOM05D002993 ORTHO05D003432 1.3e-07 59.7 54 57.4
Glyma.16G204100 Glycine max HOM05D002993 ORTHO05D003432 1.3e-07 59.7 42 71.4
CANSAT21G0916 Cannabis sativa HOM05D002993 ORTHO05D003432 1.7e-07 59.3 42 71.4
AUR62016099 Chenopodium quinoa HOM05D002993 ORTHO05D003432 1.7e-07 59.3 54 57.4
Glyma.09G153300 Glycine max HOM05D002993 ORTHO05D003432 1.7e-07 59.3 80 48.8
MD00G1055600 Malus domestica HOM05D002993 ORTHO05D003432 1.7e-07 59.3 42 71.4
Thecc.03G161800 Theobroma cacao HOM05D002993 ORTHO05D003432 1.7e-07 59.3 42 71.4
PGR042G1934 Punica granatum HOM05D002993 ORTHO05D003432 2.2e-07 58.9 62 51.6
Nn4g26419 Nelumbo nucifera HOM05D002993 ORTHO05D003432 2.8e-07 58.5 40 72.5
CDE12G0368 Ceratophyllum demersum HOM05D002993 ORTHO05D003432 3.7e-07 58.2 42 61.9
Mapoly0045s0148 Marchantia polymorpha HOM05D002993 ORTHO05D003432 3.7e-07 58.2 43 62.8
CDE04G0245 Ceratophyllum demersum HOM05D002993 ORTHO05D003432 4.9e-07 57.8 42 64.3
Migut.F00426 Erythranthe guttata HOM05D002993 ORTHO05D003432 4.9e-07 57.8 65 50.8
Nitab4.5_0000072g0370 Nicotiana tabacum HOM05D002993 ORTHO05D003432 4.9e-07 57.8 42 71.4
Gohir.A09G043900 Gossypium hirsutum HOM05D002993 ORTHO05D003432 6.3e-07 57.4 78 47.4
Lj2g0006969 Lotus japonicus HOM05D002993 ORTHO05D003432 6.3e-07 57.4 33 78.8
Lalb_Chr16g0379831 Lupinus albus HOM05D002993 ORTHO05D003432 6.3e-07 57.4 62 53.2
Oeu042587.1 Olea europaea HOM05D002993 ORTHO05D003432 6.3e-07 57.4 42 71.4
TWI14G0828 Tripterygium wilfordii HOM05D002993 ORTHO05D003432 6.3e-07 57.4 39 69.2
TAR636G0670 Trochodendron aralioides HOM05D002993 ORTHO05D003432 6.3e-07 57.4 42 69.0
arahy.Tifrunner.gnm1.ann1.GV0M2E Arachis hypogaea HOM05D002993 ORTHO05D003432 8.3e-07 57.0 39 71.8
Glyma.09G153200 Glycine max HOM05D002993 ORTHO05D003432 8.3e-07 57.0 80 47.5
Gohir.D09G045200 Gossypium hirsutum HOM05D002993 ORTHO05D003432 8.3e-07 57.0 42 69.0
Gorai.006G065200 Gossypium raimondii HOM05D002993 ORTHO05D003432 8.3e-07 57.0 42 69.0
Hma1.2p1_0654F.1_g196380 Hydrangea macrophylla HOM05D002993 ORTHO05D003432 8.3e-07 57.0 42 69.0
Phvul.002G151400 Phaseolus vulgaris HOM05D002993 ORTHO05D003432 8.3e-07 57.0 43 67.4
Duzib068G0384 Durio zibethinus HOM05D002993 ORTHO05D003432 1.4e-06 56.2 39 69.2
FAN04G3155 Fragaria x ananassa HOM05D002993 ORTHO05D003432 1.4e-06 56.2 32 81.2
FAN13G3294 Fragaria x ananassa HOM05D002993 ORTHO05D003432 1.4e-06 56.2 32 81.2
Glyma.16G204000 Glycine max HOM05D002993 ORTHO05D003432 1.4e-06 56.2 42 66.7
Lalb_Chr03g0033091 Lupinus albus HOM05D002993 ORTHO05D003432 1.4e-06 56.2 33 81.8
PSO782G3254 Papaver somniferum HOM05D002993 ORTHO05D003432 1.4e-06 56.2 66 51.5
RcHm_v2.0_Chr7g0200491 Rosa chinensis HOM05D002993 ORTHO05D003432 1.4e-06 56.2 32 81.2
Sc01g0009100 Simmondsia chinensis HOM05D002993 ORTHO05D003432 1.4e-06 56.2 42 64.3
TAR629G2083 Trochodendron aralioides HOM05D002993 ORTHO05D003432 1.4e-06 56.2 42 66.7
arahy.Tifrunner.gnm1.ann1.HKN7YH Arachis hypogaea HOM05D002993 ORTHO05D003432 1.8e-06 55.8 39 71.8
MD02G1320000 Malus domestica HOM05D002993 ORTHO05D003432 1.8e-06 55.8 42 69.0
Nitab4.5_0000439g0070 Nicotiana tabacum HOM05D002993 ORTHO05D003432 1.8e-06 55.8 43 62.8
Nitab4.5_0014178g0010 Nicotiana tabacum HOM05D002993 ORTHO05D003432 1.8e-06 55.8 43 62.8
Hund04644 Selenicereus undatus HOM05D002993 ORTHO05D003432 1.8e-06 55.8 42 64.3
Hund29193 Selenicereus undatus HOM05D002993 ORTHO05D003432 1.8e-06 55.8 42 64.3
Hund29194 Selenicereus undatus HOM05D002993 ORTHO05D003432 1.8e-06 55.8 42 64.3
Hund29836 Selenicereus undatus HOM05D002993 ORTHO05D003432 1.8e-06 55.8 42 64.3
TAR375G1145 Trochodendron aralioides HOM05D002993 ORTHO05D003432 1.8e-06 55.8 42 61.9
Aa31sc16G60 Aethionema arabicum HOM05D002993 ORTHO05D003432 2.4e-06 55.5 42 64.3
CAN.G630.51 Capsicum annuum HOM05D002993 ORTHO05D003432 2.4e-06 55.5 43 62.8
Prupe.2G002100 Prunus persica HOM05D002993 ORTHO05D003432 2.4e-06 55.5 29 89.7
SalBow4G2264 Salvia bowleyana HOM05D002993 ORTHO05D003432 2.4e-06 55.5 42 64.3
vmacro14033 Vaccinium macrocarpon HOM05D002993 ORTHO05D003432 2.4e-06 55.5 61 50.8
FvH4_5g00880 Fragaria vesca HOM05D002993 ORTHO05D003432 3.1e-06 55.1 32 78.1
FAN08G0011 Fragaria x ananassa HOM05D002993 ORTHO05D003432 3.1e-06 55.1 32 78.1
FAN18G0561 Fragaria x ananassa HOM05D002993 ORTHO05D003432 3.1e-06 55.1 32 78.1
FAN24G0790 Fragaria x ananassa HOM05D002993 ORTHO05D003432 3.1e-06 55.1 32 78.1
AT4G25370 Arabidopsis thaliana HOM05D002993 ORTHO05D003432 4.1e-06 54.7 42 61.9
CiPaw.04G063400 Carya illinoinensis HOM05D002993 ORTHO05D003432 4.1e-06 54.7 42 64.3
PSO478G4197 Papaver somniferum HOM05D002993 ORTHO05D003432 4.1e-06 54.7 42 66.7
Sabra12G0097700 Salix brachista HOM05D002993 ORTHO05D003432 4.1e-06 54.7 32 75.0
HPP92_020665 Vanilla planifolia HOM05D002993 ORTHO05D003432 4.1e-06 54.7 32 78.1
ATR0733G005 Amborella trichopoda HOM05D002993 ORTHO05D003432 5.4e-06 54.3 62 51.6
DCAR_008445 Daucus carota HOM05D002993 ORTHO05D003432 5.4e-06 54.3 43 60.5
FvH4_7g00050 Fragaria vesca HOM05D002993 ORTHO05D003432 5.4e-06 54.3 42 66.7
FAN01G1434 Fragaria x ananassa HOM05D002993 ORTHO05D003432 5.4e-06 54.3 42 66.7
FAN06G2513 Fragaria x ananassa HOM05D002993 ORTHO05D003432 5.4e-06 54.3 42 66.7
FAN10G2472 Fragaria x ananassa HOM05D002993 ORTHO05D003432 5.4e-06 54.3 42 66.7
Sp7g23390 Schrenkiella parvula HOM05D002993 ORTHO05D003432 5.4e-06 54.3 42 64.3
AL7G27760 Arabidopsis lyrata HOM05D002993 ORTHO05D003432 7.0e-06 53.9 42 61.9
Carub.0007s1564 Capsella rubella HOM05D002993 ORTHO05D003432 7.0e-06 53.9 42 61.9
CARHR232780 Cardamine hirsuta HOM05D002993 ORTHO05D003432 7.0e-06 53.9 32 78.1
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 7.0e-06 53.9 32 75.0
Pp3c18_19140 Physcomitrium patens HOM05D002993 ORTHO05D003432 7.0e-06 53.9 57 54.4
RcHm_v2.0_Chr1g0313191 Rosa chinensis HOM05D002993 ORTHO05D003432 7.0e-06 53.9 42 66.7
Sopen08g028020 Solanum pennellii HOM05D002993 ORTHO05D003432 7.0e-06 53.9 79 44.3
Thecc.03G263700 Theobroma cacao HOM05D002993 ORTHO05D003432 7.0e-06 53.9 32 78.1
BcaC06g32816 Brassica carinata HOM05D002993 ORTHO05D003432 9.2e-06 53.5 42 61.9
AUR62017370 Chenopodium quinoa HOM05D002993 ORTHO05D003432 9.2e-06 53.5 80 42.5
Thhalv10026111m.g Eutrema salsugineum HOM05D002993 ORTHO05D003432 9.2e-06 53.5 42 61.9
Gohir.A03G011200 Gossypium hirsutum HOM05D002993 ORTHO05D003432 9.2e-06 53.5 31 80.6
Gohir.D03G158700 Gossypium hirsutum HOM05D002993 ORTHO05D003432 9.2e-06 53.5 31 80.6
Gorai.003G167300 Gossypium raimondii HOM05D002993 ORTHO05D003432 9.2e-06 53.5 31 80.6
Lj2g0006653 Lotus japonicus HOM05D002993 ORTHO05D003432 9.2e-06 53.5 80 42.5
Sabra15G0144700 Salix brachista HOM05D002993 ORTHO05D003432 9.2e-06 53.5 32 71.9
Solyc08g079660.3 Solanum lycopersicum HOM05D002993 ORTHO05D003432 9.2e-06 53.5 79 44.3
VMungo1215G1559 Vigna mungo HOM05D002993 ORTHO05D003432 9.2e-06 53.5 43 62.8


User provided reference genes

Program Settings