Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 0.0e+00 2075.4 1040 100.0
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 0.0e+00 1644.0 952 87.5
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 0.0e+00 1635.5 952 86.7
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1084.3 944 60.1
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 0.0e+00 1083.2 945 60.4
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1076.6 944 59.4
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 3.4e-304 1048.5 943 58.3
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 1.1e-302 1043.5 946 58.9
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 8.1e-298 1027.3 732 73.8
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 1.2e-296 1023.5 943 55.7
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 3.7e-295 1018.5 955 56.4
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 2.1e-293 1012.7 944 56.1
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 1.5e-288 996.5 946 55.8
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 3.2e-286 988.8 946 56.1
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 3.0e-284 982.2 950 55.7
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 1.9e-283 979.5 951 54.5
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 4.3e-283 978.4 950 55.6
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 2.6e-280 969.1 945 54.3
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 2.9e-279 965.7 949 53.8
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 8.4e-279 964.1 955 54.3
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 4.0e-273 945.3 945 53.4
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 1.7e-263 913.3 962 51.6
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 1.8e-260 903.3 946 50.3
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 3.0e-252 875.9 949 48.5
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.3e-242 844.0 955 47.1
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.4e-241 840.5 949 47.9
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 5.9e-240 835.1 957 47.1
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 3.6e-237 825.9 1043 45.3
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 3.9e-236 822.4 1032 45.3
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 1.4e-233 813.9 972 46.2
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 8.0e-229 798.1 950 48.7
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 3.9e-228 795.8 945 45.3
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 8.2e-226 788.1 1162 41.5
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 8.8e-220 768.1 957 44.7
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 4.8e-218 762.3 955 44.8
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 2.5e-214 750.0 966 44.1
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 7.0e-209 731.9 754 51.2
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 2.3e-188 663.7 537 64.2
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 8.3e-186 655.2 1273 35.0
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 2.3e-180 637.1 499 64.3
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 2.6e-179 633.6 611 55.6
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 1.9e-177 627.5 465 66.5
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.7e-176 623.6 491 63.1
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 6.0e-176 622.5 485 62.7
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.9e-175 619.8 454 65.6
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 3.1e-172 610.1 491 60.9
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 5.2e-172 609.4 452 65.5
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 8.9e-172 608.6 469 64.2
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 8.9e-172 608.6 453 64.7
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 5.8e-171 605.9 470 62.6
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 1.7e-170 604.4 461 64.2
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 2.2e-170 604.0 548 58.6
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 9.6e-166 588.6 462 63.2
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 1.2e-165 588.2 454 63.7
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 3.4e-163 580.1 454 60.8
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 3.8e-162 576.6 470 61.1
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 1.4e-161 574.7 470 61.3
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 3.2e-161 573.5 469 59.5
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 5.4e-161 572.8 468 60.5
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 7.1e-161 572.4 454 60.1
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 1.2e-160 571.6 468 60.3
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 1.0e-159 568.5 461 59.9
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 3.9e-159 566.6 452 58.8
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 5.1e-159 566.2 477 59.7
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 7.3e-158 562.4 452 58.2
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 2.8e-157 560.5 452 57.5
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 2.4e-156 557.4 452 58.4
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 2.0e-155 554.3 386 69.2
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 5.8e-155 552.7 454 61.0
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 1.4e-153 548.1 1050 33.3
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 2.3e-151 540.8 1081 34.2
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 5.1e-151 539.7 448 60.7
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 2.5e-150 537.3 453 60.7
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 1.8e-148 531.2 464 57.5
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 3.1e-148 530.4 481 56.8
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 4.0e-148 530.0 455 57.8
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 6.9e-148 529.3 473 55.8
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 1.1e-145 521.9 450 58.2
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 1.1e-145 521.9 456 56.1
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.4e-145 521.5 468 56.8
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 2.5e-145 520.8 1028 33.9
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 2.5e-145 520.8 450 58.0
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 2.5e-145 520.8 489 54.8
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 5.1e-143 513.1 450 57.6
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 5.1e-143 513.1 515 52.0
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.5e-142 510.8 460 55.7
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 7.4e-142 509.2 450 57.1
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 2.1e-141 507.7 736 42.9
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 4.0e-140 503.4 472 56.1
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 5.3e-140 503.1 1078 32.9
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 4.9e-138 496.5 460 55.2
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.3e-135 488.4 462 56.5
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 5.7e-134 483.0 462 53.5
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 2.8e-133 480.7 352 65.9
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 1.4e-129 468.4 341 65.1
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 7.9e-128 462.6 521 49.5
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 7.9e-128 462.6 521 49.5
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 1.0e-127 462.2 351 64.7
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 2.6e-123 447.6 361 62.3
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 4.5e-123 446.8 728 39.3
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 5.9e-123 446.4 351 61.0
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 2.8e-117 427.6 490 46.7
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 7.2e-113 412.9 453 47.9
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 2.2e-109 401.4 607 40.2
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 6.3e-109 399.8 372 54.8
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 2.9e-106 391.0 466 42.9
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 2.5e-105 387.9 363 54.5
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 2.2e-98 364.8 451 45.5
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 8.8e-95 352.8 411 43.1
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 1.3e-93 349.0 366 50.3
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 1.5e-89 335.5 949 28.0
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 6.1e-80 303.5 258 58.1
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 1.1e-76 292.7 322 46.9
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 2.0e-70 271.9 520 36.5
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 1.2e-67 262.7 252 53.2
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 9.5e-65 253.1 196 67.3
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.5e-62 245.7 170 65.9
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 2.9e-61 241.5 206 58.7
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 1.6e-56 225.7 176 64.2
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 2.4e-47 195.3 189 51.9
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 1.0e-42 179.9 124 66.9
TAR628G0523 Trochodendron aralioides HOM05D002030 ORTHO05D007413 1.8e-31 142.5 234 36.3
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 9.6e-25 120.2 316 31.3
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 2.8e-24 118.6 145 44.1
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.9e-21 108.6 62 72.6
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.6e-16 92.8 161 34.8
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 5.9e-14 84.3 79 54.4
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 1.3e-08 66.6 42 61.9
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 2.0e-06 59.3 56 51.8


User provided reference genes

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