Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 0.0e+00 1256.5 686 100.0
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 0.0e+00 1206.8 686 96.1
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 0.0e+00 1178.7 686 93.7
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 2.5e-303 1045.0 686 83.5
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 5.5e-303 1043.9 687 82.7
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.8e-301 1038.9 687 82.5
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 3.3e-300 1034.6 687 82.1
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 9.7e-300 1033.1 687 82.5
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.8e-298 1028.9 687 82.1
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 3.1e-298 1028.1 687 82.2
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 4.1e-298 1027.7 687 82.2
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 3.4e-297 1024.6 687 81.4
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 3.8e-296 1021.1 690 81.0
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.1e-295 1019.6 687 81.7
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 3.2e-295 1018.1 687 80.9
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.4e-293 1012.7 691 80.6
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 1.8e-293 1012.3 684 81.4
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 3.0e-293 1011.5 655 83.4
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 5.7e-292 1007.3 682 79.9
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 7.4e-292 1006.9 683 80.7
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 3.7e-291 1004.6 687 80.6
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 3.7e-291 1004.6 687 80.6
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 1.1e-290 1003.0 689 80.1
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.1e-290 1003.0 683 80.4
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 3.1e-290 1001.5 687 80.2
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.1e-290 1001.1 683 80.4
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 5.3e-290 1000.7 693 80.1
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 7.0e-290 1000.3 687 80.2
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 3.5e-289 998.0 687 80.2
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 7.7e-289 996.9 691 79.3
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 2.2e-288 995.3 682 80.5
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.9e-288 995.0 687 79.5
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 5.0e-288 994.2 748 74.5
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.5e-288 993.8 682 80.6
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 6.5e-288 993.8 748 74.5
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 8.5e-288 993.4 689 79.0
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 1.1e-287 993.0 682 80.2
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 1.1e-287 993.0 665 80.6
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.5e-287 992.6 682 80.2
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 1.5e-287 992.6 668 80.1
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 4.2e-287 991.1 663 80.2
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 4.2e-287 991.1 687 78.0
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 9.4e-287 989.9 666 80.8
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.2e-286 989.6 690 78.8
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.6e-286 989.2 685 80.1
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 2.3e-285 985.3 691 78.9
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 4.0e-285 984.6 653 81.8
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 8.8e-285 983.4 689 78.2
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 7.5e-284 980.3 685 79.9
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 9.7e-284 979.9 688 78.1
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.7e-283 979.2 687 77.7
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.1e-282 976.5 691 78.1
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 1.8e-282 975.7 692 78.0
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 1.8e-282 975.7 700 77.9
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.7e-281 971.8 667 80.2
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 7.7e-281 970.3 731 75.4
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 6.5e-280 967.2 691 77.6
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 8.5e-280 966.8 689 78.1
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 1.5e-279 966.1 660 80.5
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 4.2e-279 964.5 693 77.6
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 2.7e-278 961.8 727 74.0
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 8.0e-278 960.3 682 78.2
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 1.0e-277 959.9 727 73.7
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.4e-277 959.5 689 76.8
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 4.0e-277 958.0 692 78.5
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 5.2e-277 957.6 686 77.3
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 1.5e-276 956.1 691 76.8
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 2.6e-276 955.3 688 76.6
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 5.7e-276 954.1 693 76.3
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 1.3e-275 953.0 687 76.6
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 4.8e-275 951.0 687 77.1
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 1.6e-273 946.0 691 76.4
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 4.5e-273 944.5 691 76.3
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 1.9e-271 939.1 692 75.7
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 3.2e-271 938.3 678 75.1
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 4.0e-269 931.4 683 75.7
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 7.5e-268 927.2 697 75.8
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 2.4e-266 922.2 684 74.6
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 2.4e-266 922.2 692 75.0
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 4.1e-266 921.4 692 75.0
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 5.4e-266 921.0 688 75.0
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 1.2e-265 919.8 690 74.9
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 7.7e-265 917.1 689 75.0
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 1.1e-263 913.3 678 74.3
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 7.3e-263 910.6 691 74.4
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 1.6e-262 909.4 1037 55.1
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 2.8e-262 908.7 687 74.4
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 9.8e-260 900.2 693 74.3
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 2.2e-259 899.0 690 73.8
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 2.2e-259 899.0 690 73.8
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 4.1e-258 894.8 687 72.5
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 5.4e-258 894.4 722 71.2
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 3.5e-257 891.7 655 75.0
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 4.6e-257 891.3 687 73.1
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.0e-256 888.6 734 69.5
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 3.3e-255 885.2 685 72.3
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 1.4e-253 879.8 687 73.4
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 6.8e-253 877.5 639 76.2
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 8.3e-251 870.5 687 72.1
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.1e-250 870.2 687 72.1
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.9e-250 869.4 687 72.2
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 3.2e-250 868.6 576 83.0
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.3e-248 863.2 651 74.2
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 4.3e-247 858.2 703 68.4
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 7.5e-244 847.4 624 75.8
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.7e-243 846.3 720 67.8
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 4.7e-238 828.2 719 66.5
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.6e-236 822.4 741 65.0
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 1.2e-233 813.5 695 65.8
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 1.3e-232 810.1 683 67.3
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 5.1e-232 808.1 668 67.5
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 8.1e-230 800.8 679 67.5
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 7.1e-218 761.1 667 65.4
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 6.4e-211 738.0 554 75.8
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 8.7e-208 727.6 651 63.1
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 1.5e-204 716.8 703 61.5
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 4.5e-204 715.3 657 61.2
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 8.7e-200 701.0 652 61.7
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 5.1e-192 675.2 401 94.8
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 1.6e-161 573.9 425 76.2
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 2.6e-159 566.6 691 49.1
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 5.0e-155 552.4 368 80.2
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.5e-130 471.1 346 70.5
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 7.5e-127 458.8 575 50.4
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 4.9e-102 376.3 415 56.6
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 9.3e-93 345.5 500 48.4
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 2.8e-89 334.0 506 48.0
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 6.9e-80 302.8 712 32.3
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.7e-73 281.6 276 61.6
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 5.3e-56 223.4 185 69.7
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 3.6e-52 210.7 779 31.3
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 8.8e-51 206.1 562 34.0
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 2.5e-45 188.0 128 78.1
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 6.1e-44 183.3 154 70.1
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 4.0e-43 180.6 127 78.0
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 4.7e-36 157.1 93 84.9
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 4.5e-31 140.6 601 27.0
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 8.3e-25 119.8 671 22.4
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.6e-23 115.5 93 71.0
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.2e-17 95.1 69 75.4
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 1.2e-15 89.4 109 57.8
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 4.6e-15 87.4 731 22.2
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 1.1e-13 82.8 82 64.6
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 2.6e-10 71.6 43 74.4
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 7.5e-10 70.1 82 59.8
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.6e-07 62.4 191 35.1
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 7.8e-07 60.1 52 65.4


User provided reference genes

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