Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.2e-126 456.4 214 100.0
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.7e-114 416.0 214 89.3
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.6e-110 402.1 210 88.1
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 9.3e-108 393.7 214 85.0
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.2e-102 376.7 214 81.3
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 2.7e-83 312.4 212 67.5
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 2.0e-78 296.2 211 65.9
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 5.0e-77 291.6 210 65.2
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 2.2e-72 276.2 214 62.6
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.6e-70 270.0 209 64.6
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.6e-70 270.0 209 64.6
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 1.3e-69 266.9 214 60.7
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 2.7e-67 259.2 210 61.0
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 4.0e-66 255.4 210 61.9
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 9.7e-65 250.8 188 63.3
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.3e-64 250.4 212 58.0
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 2.7e-59 232.6 212 56.1
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.8e-58 229.9 203 55.2
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.0e-57 226.5 236 51.7
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 2.0e-54 216.5 215 54.4
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.7e-54 216.1 214 52.8
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.7e-54 216.1 214 52.8
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.2e-51 207.2 207 50.2
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 1.4e-50 203.8 212 49.1
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 1.2e-49 200.7 213 50.2
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 1.3e-48 197.2 208 46.6
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 6.3e-48 194.9 172 57.6
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 1.4e-47 193.7 209 49.3
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.0e-45 187.6 202 44.6
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-44 184.1 221 46.2
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 2.5e-44 183.0 212 45.3
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 5.6e-44 181.8 207 44.4
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 5.6e-44 181.8 207 44.4
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 9.5e-44 181.0 207 44.4
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.8e-43 179.5 221 44.8
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 2.3e-42 176.4 171 50.9
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.0e-42 175.6 201 42.8
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 4.0e-42 175.6 132 61.4
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 6.8e-42 174.9 227 41.9
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 6.8e-42 174.9 145 57.2
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 6.8e-42 174.9 215 46.5
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 8.9e-42 174.5 206 46.1
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 2.6e-41 172.9 201 42.8
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.7e-41 171.8 201 42.3
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 7.5e-41 171.4 153 56.9
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 7.5e-41 171.4 153 56.9
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.7e-40 170.2 130 63.8
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.9e-40 169.5 218 44.0
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.4e-40 168.3 207 45.9
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.1e-39 167.5 132 57.6
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 1.4e-39 167.2 201 41.3
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-39 167.2 132 57.6
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 1.8e-39 166.8 205 45.9
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.1e-39 165.6 204 45.1
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 7.0e-39 164.9 202 41.6
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 1.6e-38 163.7 202 42.1
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.0e-38 163.3 202 46.5
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 2.0e-38 163.3 202 42.1
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.7e-38 162.9 202 41.6
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 2.7e-38 162.9 132 55.3
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 3.5e-38 162.5 140 51.4
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 4.6e-38 162.2 140 50.7
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 5.9e-38 161.8 131 60.3
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.3e-37 160.6 202 43.1
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.3e-37 160.6 202 43.1
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.7e-37 160.2 218 42.2
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.3e-37 159.8 217 43.3
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 5.0e-37 158.7 127 55.1
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 5.0e-37 158.7 127 55.1
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.6e-37 158.3 216 41.7
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.6e-37 158.3 216 41.2
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 8.6e-37 157.9 142 51.4
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 8.6e-37 157.9 142 51.4
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.5e-36 157.1 209 43.5
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.5e-36 156.4 206 45.6
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 5.6e-36 155.2 205 42.9
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.6e-36 155.2 215 40.0
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 1.8e-34 150.2 216 39.8
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.0e-34 149.1 216 40.7
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 5.2e-34 148.7 215 40.5
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.8e-34 148.3 217 40.1
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.8e-34 148.3 218 39.4
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.4e-33 145.6 217 39.6
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 1.3e-32 144.1 216 38.4
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.7e-32 143.7 214 41.1
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.7e-32 142.5 215 38.1
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.4e-32 141.7 216 39.4
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.4e-31 139.8 198 41.4
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.2e-31 139.4 220 39.5
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.2e-31 139.4 218 40.8
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 9.2e-31 137.9 204 39.7
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 9.2e-31 137.9 204 39.7
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-30 137.1 167 44.3
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 2.7e-30 136.3 206 39.8
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.6e-30 135.6 191 43.5
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 6.0e-30 135.2 202 41.6
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 1.0e-29 134.4 223 39.0
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.3e-29 134.0 74 75.7
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 1.3e-29 134.0 219 39.3
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.7e-29 133.7 206 39.8
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.3e-28 129.4 177 42.9
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 5.6e-28 128.6 214 37.9
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 7.3e-28 128.3 197 39.6
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 3.6e-27 125.9 197 39.1
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 8.1e-27 124.8 204 39.2
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.8e-26 123.6 202 35.1
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.3e-26 123.2 208 38.5
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.4e-25 119.0 189 36.5
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.8e-25 118.6 168 39.9
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 2.9e-24 116.3 219 41.6
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 2.9e-24 116.3 175 38.3
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 3.7e-24 115.9 214 37.9
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.9e-24 115.5 154 44.8
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 8.3e-24 114.8 218 39.0
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 8.3e-24 114.8 218 36.7
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.1e-23 114.4 209 35.4
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.1e-23 114.4 145 43.4
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 1.4e-23 114.0 218 39.0
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 1.4e-23 114.0 218 39.0
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 1.2e-22 110.9 212 33.5
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-22 110.5 170 38.2
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-21 107.5 95 53.7
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.3e-21 106.7 134 44.0
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 6.6e-21 105.1 216 35.2
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.6e-21 105.1 111 48.6
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 4.3e-20 102.4 222 33.3
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.6e-20 102.1 150 37.3
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 5.6e-20 102.1 208 36.5
HanXRQChr03g0085641 Helianthus annuus HOM05D004865 ORTHO05D005949 1.6e-19 100.5 140 47.1
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 1.6e-19 100.5 217 36.4
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 2.1e-19 100.1 207 37.7
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-19 100.1 130 44.6
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.8e-19 99.8 213 34.3
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 2.8e-19 99.8 207 37.7
CSS0013136 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 4.7e-19 99.0 143 39.9
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.1e-19 98.2 96 55.2
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 3.1e-18 96.3 160 38.1
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 5.2e-18 95.5 187 29.4
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.6e-17 93.2 215 33.5
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 1.4e-15 87.4 109 41.3
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 2.7e-14 83.2 141 35.5
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 4.6e-14 82.4 223 30.5
Sc24g0002640 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.3e-13 80.1 143 36.4
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 3.0e-13 79.7 217 29.5
ECA233G5781 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.3e-12 76.3 138 35.5
Sc05g0005670 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.7e-11 72.4 76 47.4
ClCG03G010280 Citrullus lanatus HOM05D004865 ORTHO05D005949 8.1e-11 71.6 49 71.4
Sed0001119 Sechium edule HOM05D004865 ORTHO05D005949 8.1e-11 71.6 168 31.5
ClCG03G010090 Citrullus lanatus HOM05D004865 ORTHO05D005949 7.6e-09 65.1 48 60.4
AUR62014648 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.7e-08 63.9 64 54.7
AUR62001167 Chenopodium quinoa HOM05D009434 ORTHO05D011504 4.9e-08 62.4 114 34.2
AUR62022156 Chenopodium quinoa HOM05D009434 ORTHO05D011504 1.6e-06 57.4 139 28.8
Duzib128G0130 Durio zibethinus HOM05D014226 ORTHO05D016989 7.8e-06 55.1 140 33.6


User provided reference genes

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