Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 5.5e-173 610.9 318 100.0
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 3.4e-106 389.0 333 66.1
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 2.5e-72 276.6 218 68.8
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 1.4e-51 207.6 310 48.1
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.5e-21 107.8 253 32.8
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 3.2e-19 100.1 156 39.7
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 5.4e-19 99.4 274 33.6
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 2.3e-17 94.0 252 33.7
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.1e-16 91.7 278 33.5
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 1.9e-16 90.9 269 31.6
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 3.6e-15 86.7 239 34.3
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.0e-15 85.5 234 32.5
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 1.8e-14 84.3 234 32.1
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 4.0e-14 83.2 144 42.4
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.0e-14 83.2 173 36.4
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.2e-14 82.8 234 32.1
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.2e-14 82.8 173 35.8
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 5.2e-14 82.8 342 28.7
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 4.4e-13 79.7 236 33.5
Sed0012398 Sechium edule HOM05D004520 ORTHO05D005520 5.8e-13 79.3 239 33.1
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.5e-13 79.0 131 41.2
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.2e-12 77.4 158 39.2
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.9e-12 77.0 115 41.7
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 4.9e-12 76.3 263 30.8
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.1e-11 75.1 148 36.5
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 1.9e-11 74.3 171 31.6
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 4.1e-11 73.2 78 50.0
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 7.0e-11 72.4 134 40.3
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.2e-10 71.6 160 33.8
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 1.2e-10 71.6 126 39.7
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 1.6e-10 71.2 136 39.0
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.6e-10 71.2 183 34.4
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 2.1e-10 70.9 138 39.1
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 2.1e-10 70.9 154 37.0
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 2.7e-10 70.5 122 39.3
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.5e-10 70.1 174 34.5
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.6e-10 69.7 172 33.7
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 4.6e-10 69.7 158 33.5
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 6.0e-10 69.3 115 40.0
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 6.0e-10 69.3 182 33.5
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 6.0e-10 69.3 145 36.6
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 6.0e-10 69.3 148 35.1
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 6.0e-10 69.3 152 36.2
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 7.8e-10 68.9 160 33.1
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 7.8e-10 68.9 139 36.0
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 7.8e-10 68.9 169 35.5
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 1.0e-09 68.6 126 34.9
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 1.0e-09 68.6 126 34.9
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.3e-09 68.2 160 33.1
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.7e-09 67.8 126 38.1
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.7e-09 67.8 146 34.2
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.7e-09 67.8 140 35.7
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.3e-09 67.4 159 33.3
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 2.3e-09 67.4 160 32.5
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 2.3e-09 67.4 173 32.4
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 2.3e-09 67.4 173 32.4
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 2.3e-09 67.4 137 36.5
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.3e-09 67.4 203 31.0
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 3.0e-09 67.0 140 35.0
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 3.0e-09 67.0 140 35.0
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 3.0e-09 67.0 179 32.4
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 3.9e-09 66.6 135 36.3
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 5.1e-09 66.2 160 32.5
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 5.1e-09 66.2 142 33.8
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 6.6e-09 65.9 140 35.0
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 8.6e-09 65.5 123 38.2
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 1.1e-08 65.1 128 38.3
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-08 65.1 128 38.3
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-08 65.1 128 38.3
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.5e-08 64.7 95 35.8
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 1.5e-08 64.7 129 35.7
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 1.5e-08 64.7 166 33.1
Ciclev10003675m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.9e-08 64.3 268 30.2
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.9e-08 64.3 167 35.3
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.3e-08 63.5 125 38.4
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 3.3e-08 63.5 123 37.4
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 5.6e-08 62.8 188 34.0
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.6e-08 62.8 148 37.2
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 5.6e-08 62.8 172 32.0
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 7.3e-08 62.4 137 34.3
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 7.3e-08 62.4 117 36.8
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 9.5e-08 62.0 183 33.3
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.6e-07 61.2 164 32.9
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.6e-07 61.2 164 32.9
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 2.1e-07 60.8 137 35.0
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 2.1e-07 60.8 126 34.9
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 2.8e-07 60.5 123 35.8
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 2.8e-07 60.5 119 37.8
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.6e-07 60.1 140 33.6
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 6.2e-07 59.3 165 33.3
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 1.1e-06 58.5 64 50.0
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 1.1e-06 58.5 148 31.8
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.1e-06 58.5 86 39.5
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 1.4e-06 58.2 160 33.8
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.4e-06 58.2 205 32.2
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 1.4e-06 58.2 70 45.7
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 2.3e-06 57.4 79 38.0
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 3.1e-06 57.0 160 33.1
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 3.1e-06 57.0 120 35.8
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 4.0e-06 56.6 118 37.3
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 5.2e-06 56.2 131 35.1
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 6.8e-06 55.8 88 38.6
Phvul.009G027400 Phaseolus vulgaris HOM05D016564 ORTHO05D019006 6.8e-06 55.8 219 27.4


User provided reference genes

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