Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 0.0e+00 2654.4 1497 100.0
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 0.0e+00 2125.9 1479 81.2
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 0.0e+00 2125.9 1479 81.1
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 0.0e+00 1822.4 1480 72.4
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 0.0e+00 1333.9 842 84.0
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 1.2e-222 778.1 1501 40.1
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 1.5e-215 754.6 1499 41.8
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 8.0e-206 722.2 1501 40.1
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 1.6e-185 654.8 1700 35.8
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 1.7e-184 651.4 1615 37.5
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 3.3e-183 647.1 1688 36.9
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 3.7e-179 633.6 1685 34.4
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 4.9e-179 633.3 1624 37.3
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.2e-172 612.1 1585 35.6
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 2.0e-172 611.3 1103 40.5
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 2.4e-170 604.4 1719 32.4
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 4.6e-169 600.1 1234 37.0
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.0e-168 597.4 1182 35.4
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 6.8e-165 586.3 1577 33.9
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 9.9e-164 582.4 1507 38.6
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 8.4e-163 579.3 1570 34.8
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.1e-161 574.7 1572 36.4
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.0e-160 572.4 1544 32.4
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 2.3e-160 571.2 1223 35.2
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 9.9e-156 555.8 1489 37.3
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 2.9e-155 554.3 1554 34.2
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.0e-152 545.8 1580 35.5
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 3.0e-144 517.7 1078 36.5
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 6.7e-144 516.5 1100 36.0
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 8.1e-142 509.6 1529 35.3
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 1.0e-136 492.7 887 38.6
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 5.6e-135 486.9 894 39.3
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.0e-133 480.7 1050 35.4
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 5.3e-133 480.3 1493 32.3
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 9.0e-133 479.6 1254 31.8
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 1.0e-131 476.1 1488 33.7
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 5.5e-130 470.3 1596 30.5
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.0e-128 464.5 1554 33.7
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 1.5e-124 452.2 1547 33.5
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 5.0e-123 447.2 1516 29.1
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 3.2e-122 444.5 1237 32.0
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 5.5e-122 443.7 871 34.6
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 1.8e-120 438.7 886 37.4
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 9.1e-117 426.4 1501 31.9
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 2.6e-116 424.9 1481 29.5
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 7.7e-116 423.3 1125 31.7
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 1.3e-115 422.5 1502 30.8
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 1.3e-115 422.5 1253 30.8
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 2.1e-113 415.2 875 35.8
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 3.0e-112 411.4 1231 30.1
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 1.1e-111 409.5 1503 29.4
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 4.1e-109 401.0 1505 29.5
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 5.0e-107 394.0 1090 33.6
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 5.0e-107 394.0 1499 34.0
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 3.2e-106 391.3 918 33.8
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 1.6e-105 389.0 1139 31.9
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 7.9e-105 386.7 1554 28.9
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 1.4e-104 386.0 1488 30.0
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.4e-104 386.0 726 37.3
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 3.0e-104 384.8 1490 28.5
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 2.0e-103 382.1 1190 30.3
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 6.3e-102 377.1 1493 29.6
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.4e-101 375.2 953 33.4
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 5.3e-101 374.0 1493 31.0
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 4.5e-100 370.9 1106 30.3
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 3.8e-99 367.9 1490 29.2
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 5.0e-99 367.5 1494 28.0
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 6.5e-99 367.1 1490 29.1
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 6.5e-99 367.1 1495 26.9
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 8.5e-99 366.7 1137 30.7
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 1.5e-98 365.9 1132 30.7
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 2.5e-98 365.2 1111 30.9
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 2.5e-98 365.2 1087 30.6
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 3.2e-98 364.8 1508 29.2
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 2.6e-95 355.1 1017 31.8
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 3.3e-95 354.8 1488 26.6
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 5.3e-93 347.4 1517 31.6
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 3.5e-92 344.7 1379 31.2
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 7.7e-92 343.6 1622 27.7
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 4.7e-89 334.3 1091 28.8
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 4.8e-86 324.3 1132 28.7
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 8.3e-86 323.6 1466 31.4
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 3.1e-85 321.6 1128 28.9
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 9.1e-85 320.1 1208 27.2
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.2e-84 319.7 1485 27.3
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.0e-84 318.9 1216 27.2
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.7e-83 315.8 1148 28.7
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 7.2e-82 310.5 1290 32.6
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 8.0e-81 307.0 1113 28.2
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 2.3e-80 305.4 1491 25.3
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 3.0e-80 305.1 1485 31.3
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 6.8e-80 303.9 820 32.0
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 8.9e-80 303.5 1514 27.9
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 7.5e-79 300.4 878 31.9
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 2.2e-78 298.9 1098 28.4
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 8.3e-78 297.0 1309 27.7
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.6e-76 292.7 1511 30.6
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 3.6e-73 281.6 785 30.6
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 8.0e-73 280.4 1148 27.3
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.0e-72 280.0 960 28.5
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 3.5e-68 265.0 1598 26.2
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 1.7e-62 246.1 1534 24.1
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 7.8e-60 237.3 884 28.8
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 9.5e-58 230.3 834 27.8
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 1.2e-55 223.4 1033 34.6
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 1.1e-53 216.9 814 30.1
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 4.1e-53 214.9 1546 23.2
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 8.6e-51 207.2 126 85.7
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.7e-46 193.0 439 31.9
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.7e-46 193.0 439 31.9
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.7e-46 193.0 439 31.9
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 2.8e-41 175.6 240 41.7
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 1.4e-40 173.3 1180 24.0
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.3e-35 156.8 577 36.6
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 5.1e-35 154.8 478 28.9
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 7.6e-31 141.0 341 31.4
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 3.2e-29 135.6 292 34.2
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 7.1e-29 134.4 337 30.6
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 9.3e-29 134.0 518 28.8
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 6.0e-28 131.3 392 28.1
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 6.7e-27 127.9 341 29.9
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.1e-26 127.1 1026 22.4
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 5.6e-26 124.8 152 48.7
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.1e-24 120.6 518 28.6
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 3.1e-24 119.0 299 31.4
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.3e-22 113.6 889 23.4
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 4.9e-22 111.7 121 53.7
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 9.3e-21 107.5 130 47.7
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 1.6e-17 96.7 134 43.3
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 6.2e-17 94.7 129 39.5
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 3.1e-16 92.4 490 42.7
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 1.2e-15 90.5 118 44.9
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 3.4e-15 89.0 327 31.5
MELO3C033939.2 Cucumis melo HOM05D018160 ORTHO05D034961 2.2e-14 86.3 58 72.4
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 4.9e-14 85.1 119 41.2
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 8.4e-14 84.3 111 47.7
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 8.4e-14 84.3 86 51.2
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 1.4e-13 83.6 281 42.3
DCAR_005756 Daucus carota HOM05D005129 ORTHO05D005585 2.5e-13 82.8 231 29.9
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 7.9e-12 77.8 507 27.6
PSO675G3866 Papaver somniferum HOM05D026995 ORTHO05D005585 6.7e-11 74.7 110 43.6
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 2.5e-10 72.8 225 30.2
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 2.5e-10 72.8 223 31.4
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 3.3e-10 72.4 509 26.5
PSO541G4161 Papaver somniferum HOM05D026995 ORTHO05D005585 3.1e-08 65.9 86 47.7
SEGI_31962 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.0e-07 63.2 378 26.2
Medtr7g451470 Medicago truncatula HOM05D002737 ORTHO05D009499 2.9e-06 59.3 190 29.5
CSS0038484 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 3.8e-06 58.9 95 46.3
CSS0045402 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 3.8e-06 58.9 118 39.8


User provided reference genes

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