Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G008150 Citrullus lanatus HOM05D007285 ORTHO05D009224 3.8e-52 208.0 112 100.0
CsaV3_1G012400 Cucumis sativus L. HOM05D007285 ORTHO05D009224 2.5e-48 195.3 112 93.8
Sed0001788 Sechium edule HOM05D007285 ORTHO05D009224 1.3e-47 193.0 112 92.0
Sed0014393 Sechium edule HOM05D007285 ORTHO05D009224 2.0e-45 185.7 112 87.5
COL.COLO4_31450 Corchorus olitorius HOM05D007285 ORTHO05D009224 5.5e-35 151.0 106 76.4
Gorai.010G155100 Gossypium raimondii HOM05D007285 ORTHO05D009224 1.0e-33 146.7 103 75.7
FAN16G1611 Fragaria x ananassa HOM05D007285 ORTHO05D009224 3.9e-33 144.8 108 71.3
Gohir.D06G133300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 3.9e-33 144.8 103 74.8
RcHm_v2.0_Chr5g0008721 Rosa chinensis HOM05D007285 ORTHO05D009224 3.9e-33 144.8 111 70.3
FAN21G1653 Fragaria x ananassa HOM05D007285 ORTHO05D009224 5.1e-33 144.4 112 71.4
Actinidia07587 Actinidia chinensis HOM05D007285 ORTHO05D009224 6.7e-33 144.1 109 73.4
Atru.chr10.1858 Acer truncatum HOM05D007285 ORTHO05D009224 1.5e-32 142.9 112 68.8
FvH4_3g08990 Fragaria vesca HOM05D007285 ORTHO05D009224 2.0e-32 142.5 108 70.4
Potri.004G045400 Populus trichocarpa HOM05D007285 ORTHO05D009224 5.7e-32 141.0 100 74.0
Thecc.06G185100 Theobroma cacao HOM05D007285 ORTHO05D009224 5.7e-32 141.0 104 73.1
FAN25G3510 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.7e-31 139.4 112 67.9
Medtr4g088680 Medicago truncatula HOM05D007285 ORTHO05D009224 1.7e-31 139.4 108 69.4
Gohir.A06G129300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 2.8e-31 138.7 103 71.8
MD00G1116000 Malus domestica HOM05D007285 ORTHO05D009224 2.8e-31 138.7 115 64.3
Glyma.07G198400 Glycine max HOM05D007285 ORTHO05D009224 4.8e-31 137.9 95 77.9
Prupe.4G049200 Prunus persica HOM05D007285 ORTHO05D009224 4.8e-31 137.9 105 68.6
Hma1.2p1_0208F.1_g088230 Hydrangea macrophylla HOM05D007285 ORTHO05D009224 6.3e-31 137.5 107 71.0
TWI38G2229 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 6.3e-31 137.5 92 75.0
Lj4g0016922 Lotus japonicus HOM05D007285 ORTHO05D009224 1.1e-30 136.7 108 68.5
PGR042G2867 Punica granatum HOM05D007285 ORTHO05D009224 1.4e-30 136.3 103 68.9
Actinidia26129 Actinidia chinensis HOM05D007285 ORTHO05D009224 2.4e-30 135.6 109 70.6
CiPaw.09G061300 Carya illinoinensis HOM05D007285 ORTHO05D009224 2.4e-30 135.6 105 69.5
Ca_18554_v3 Cicer arietinum L. HOM05D007285 ORTHO05D009224 2.4e-30 135.6 108 69.4
Ciclev10017252m.g Citrus clementina HOM05D007285 ORTHO05D009224 2.4e-30 135.6 106 67.9
Glyma.13G178000 Glycine max HOM05D007285 ORTHO05D009224 2.4e-30 135.6 97 76.3
MD10G1292600 Malus domestica HOM05D007285 ORTHO05D009224 2.4e-30 135.6 105 68.6
TPR.G16329 Trifolium pratense HOM05D007285 ORTHO05D009224 2.4e-30 135.6 106 69.8
Psat7g114520 Pisum sativum HOM05D007285 ORTHO05D009224 3.1e-30 135.2 104 70.2
Manes.17G046800 Manihot esculenta HOM05D007285 ORTHO05D009224 4.1e-30 134.8 92 78.3
VMungo0251G0987 Vigna mungo HOM05D007285 ORTHO05D009224 1.2e-29 133.3 102 68.6
Phvul.002G229600 Phaseolus vulgaris HOM05D007285 ORTHO05D009224 1.5e-29 132.9 108 65.7
Eucgr.E03264 Eucalyptus grandis HOM05D007285 ORTHO05D009224 2.0e-29 132.5 102 69.6
Rhsim02G0132100 Rhododendron simsii HOM05D007285 ORTHO05D009224 2.6e-29 132.1 109 67.9
arahy.Tifrunner.gnm1.ann1.J7N80D Arachis hypogaea HOM05D007285 ORTHO05D009224 4.5e-29 131.3 113 66.4
arahy.Tifrunner.gnm1.ann1.VSLT1W Arachis hypogaea HOM05D007285 ORTHO05D009224 4.5e-29 131.3 113 66.4
Peaxi162Scf00623g00519 Petunia axillaris HOM05D007285 ORTHO05D009224 1.3e-28 129.8 103 69.9
Nitab4.5_0005745g0020 Nicotiana tabacum HOM05D007285 ORTHO05D009224 2.9e-28 128.6 112 64.3
TWI63G1057 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 2.9e-28 128.6 92 71.7
Dinv40575 Davidia involucrata HOM05D007285 ORTHO05D009224 8.5e-28 127.1 109 66.1
CSS0032734 Camellia sinensis var. sinensis HOM05D007285 ORTHO05D009224 1.1e-27 126.7 109 66.1
Lalb_Chr15g0089751 Lupinus albus HOM05D007285 ORTHO05D009224 1.9e-27 125.9 110 66.4
Lsat_1_v5_gn_4_52261 Lactuca sativa HOM05D007285 ORTHO05D009224 5.5e-27 124.4 113 64.6
MELO3C002614.2 Cucumis melo HOM05D007285 ORTHO05D009224 9.4e-27 123.6 68 95.6
HanXRQChr14g0435131 Helianthus annuus HOM05D007285 ORTHO05D009224 9.4e-27 123.6 100 68.0
CAN.G529.14 Capsicum annuum HOM05D007285 ORTHO05D009224 1.2e-26 123.2 103 67.0
BolC3t19748H Brassica oleracea HOM05D007285 ORTHO05D009224 1.6e-26 122.9 97 64.9
MSTRG.7339 Avicennia marina HOM05D007285 ORTHO05D009224 2.1e-26 122.5 113 62.8
AT1G28250 Arabidopsis thaliana HOM05D007285 ORTHO05D009224 2.7e-26 122.1 97 61.9
DCAR_008032 Daucus carota HOM05D007285 ORTHO05D009224 3.6e-26 121.7 102 67.6
Aa31LG6G10160 Aethionema arabicum HOM05D007285 ORTHO05D009224 4.7e-26 121.3 95 64.2
CANSAT35G0751 Cannabis sativa HOM05D007285 ORTHO05D009224 4.7e-26 121.3 111 60.4
AL1G41800 Arabidopsis lyrata HOM05D007285 ORTHO05D009224 6.1e-26 120.9 97 61.9
CARHR027740 Cardamine hirsuta HOM05D007285 ORTHO05D009224 6.1e-26 120.9 93 64.5
Dinv17325 Davidia involucrata HOM05D007285 ORTHO05D009224 6.1e-26 120.9 102 68.6
Hund23773 Selenicereus undatus HOM05D007285 ORTHO05D009224 6.1e-26 120.9 112 64.3
Sopen02g022850 Solanum pennellii HOM05D007285 ORTHO05D009224 8.0e-26 120.6 109 61.5
Carub.0001s2669 Capsella rubella HOM05D007285 ORTHO05D009224 1.0e-25 120.2 108 59.3
Solyc02g078010.4 Solanum lycopersicum HOM05D007285 ORTHO05D009224 1.0e-25 120.2 109 61.5
Cc02_g13540 Coffea canephora HOM05D007285 ORTHO05D009224 1.8e-25 119.4 102 64.7
Nn1g04136 Nelumbo nucifera HOM05D007285 ORTHO05D009224 1.8e-25 119.4 100 65.0
SalBow8G5072 Salvia bowleyana HOM05D007285 ORTHO05D009224 1.8e-25 119.4 89 73.0
AUR62017028 Chenopodium quinoa HOM05D007285 ORTHO05D009224 2.3e-25 119.0 103 67.0
EL10Ac8g20395 Beta vulgaris HOM05D007285 ORTHO05D009224 3.0e-25 118.6 103 66.0
SGA_v2.0_scaffold100G29692 Striga asiatica HOM05D007285 ORTHO05D009224 3.0e-25 118.6 104 64.4
THA.LOC104820545 Tarenaya hassleriana HOM05D007285 ORTHO05D009224 5.2e-25 117.9 106 59.4
A09p37820 Brassica napus HOM05D007285 ORTHO05D009224 1.1e-24 116.7 92 63.0
BraA09t39294Z Brassica rapa HOM05D007285 ORTHO05D009224 1.1e-24 116.7 92 63.0
Migut.M01131 Erythranthe guttata HOM05D007285 ORTHO05D009224 1.1e-24 116.7 99 65.7
BcaB07g32433 Brassica carinata HOM05D007285 ORTHO05D009224 1.5e-24 116.3 97 58.8
BcaC05g26830 Brassica carinata HOM05D007285 ORTHO05D009224 2.6e-24 115.5 92 62.0
C05p27060 Brassica napus HOM05D007285 ORTHO05D009224 2.6e-24 115.5 92 62.0
Haze_06424 Corylus avellana HOM05D007285 ORTHO05D009224 7.4e-24 114.0 77 80.5
Thhalv10009792m.g Eutrema salsugineum HOM05D007285 ORTHO05D009224 1.7e-23 112.8 106 58.5
unitig_27.g24965 Utricularia gibba HOM05D007285 ORTHO05D009224 2.2e-23 112.5 103 63.1
Sc05g0007570 Simmondsia chinensis HOM05D007285 ORTHO05D009224 2.4e-22 109.0 101 62.4
BcaC01g00030 Brassica carinata HOM05D007285 ORTHO05D009224 3.1e-22 108.6 123 51.2
Sabra04G0028300 Salix brachista HOM05D007285 ORTHO05D009224 3.1e-22 108.6 147 48.3
Ah.09g237440 Amaranthus hybridus HOM05D007285 ORTHO05D009224 4.1e-22 108.2 112 56.2
PSO541G0778 Papaver somniferum HOM05D007285 ORTHO05D009224 5.3e-22 107.8 100 59.0
TAR626G1757 Trochodendron aralioides HOM05D007285 ORTHO05D009224 1.2e-21 106.7 103 58.3
QL05p041285 Quercus lobata HOM05D007285 ORTHO05D009224 3.5e-21 105.1 80 70.0
BolC5t31425H Brassica oleracea HOM05D007285 ORTHO05D009224 5.9e-21 104.4 110 51.8
ATR0763G085 Amborella trichopoda HOM05D007285 ORTHO05D009224 1.7e-20 102.8 107 55.1
CDE01G0551 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 8.5e-20 100.5 107 52.3
ECA234G4273 Erigeron canadensis HOM05D007285 ORTHO05D009224 1.5e-19 99.8 70 74.3
vmacro15913 Vaccinium macrocarpon HOM05D007285 ORTHO05D009224 5.5e-19 97.8 73 74.0
HPP92_007016 Vanilla planifolia HOM05D007285 ORTHO05D009224 5.5e-19 97.8 101 56.4
BcaB03g12118 Brassica carinata HOM05D007285 ORTHO05D009224 1.2e-18 96.7 73 65.8
PGSC0003DMG401029703 Solanum tuberosum HOM05D007285 ORTHO05D009224 1.0e-17 93.6 83 65.1
DCAR_004065 Daucus carota HOM05D007285 ORTHO05D009224 1.8e-17 92.8 75 69.3
Zm00001eb305570 Zea mays HOM05D007285 ORTHO05D009224 1.8e-17 92.8 88 58.0
SEGI_38595 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 3.0e-17 92.0 103 51.5
SalBow8G3155 Salvia bowleyana HOM05D007285 ORTHO05D009224 5.7e-16 87.8 60 78.3
Mapoly0007s0165 Marchantia polymorpha HOM05D007285 ORTHO05D009224 1.4e-14 83.2 101 50.5
Pp3c8_510 Physcomitrium patens HOM05D007285 ORTHO05D009224 4.5e-13 78.2 90 48.9
Os07g0299600 Oryza sativa ssp. japonica HOM05D007285 ORTHO05D009224 4.2e-11 71.6 87 50.6
C03p74970 Brassica napus HOM05D007285 ORTHO05D009224 1.8e-09 66.2 55 58.2
CDE12G0235 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 1.5e-08 63.2 100 44.0
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 9.8e-08 60.5 86 43.0
SEGI_39568 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 3.1e-06 55.5 49 57.1


User provided reference genes

Program Settings