Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 1.3e-52 209.5 108 100.0
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 3.9e-46 188.0 109 89.0
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 1.5e-45 186.0 109 88.1
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 8.2e-44 180.3 109 81.7
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 6.9e-35 150.6 119 68.9
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 1.5e-34 149.4 112 69.6
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 1.5e-34 149.4 112 69.6
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 2.6e-34 148.7 112 72.3
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 2.6e-34 148.7 111 68.5
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 5.9e-34 147.5 116 63.8
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 7.6e-34 147.1 119 64.7
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 1.3e-33 146.4 118 67.8
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 1.3e-33 146.4 117 67.5
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 2.9e-33 145.2 116 69.8
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 2.9e-33 145.2 118 67.8
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 3.8e-33 144.8 116 62.9
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 5.0e-33 144.4 119 65.5
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 5.0e-33 144.4 120 62.5
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 5.0e-33 144.4 112 67.0
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 6.5e-33 144.1 113 62.8
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.1e-32 143.3 120 66.7
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 1.1e-32 143.3 115 66.1
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 1.1e-32 143.3 116 65.5
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 3.2e-32 141.7 113 65.5
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 5.5e-32 141.0 113 61.1
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 7.2e-32 140.6 119 63.0
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 9.3e-32 140.2 120 60.0
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 1.2e-31 139.8 122 68.9
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 2.7e-31 138.7 116 66.4
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 3.6e-31 138.3 120 60.8
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 4.6e-31 137.9 120 67.5
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 7.9e-31 137.1 117 68.4
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 7.9e-31 137.1 119 63.0
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 1.0e-30 136.7 122 54.9
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 1.4e-30 136.3 124 55.6
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 1.4e-30 136.3 124 58.1
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 1.4e-30 136.3 122 60.7
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 2.3e-30 135.6 114 58.8
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 3.9e-30 134.8 124 54.8
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 3.9e-30 134.8 115 62.6
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 5.1e-30 134.4 121 57.0
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 5.1e-30 134.4 124 63.7
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 6.7e-30 134.0 108 67.6
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 6.7e-30 134.0 108 67.6
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 6.7e-30 134.0 112 65.2
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 8.8e-30 133.7 117 62.4
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 8.8e-30 133.7 116 61.2
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 1.1e-29 133.3 115 63.5
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 1.1e-29 133.3 117 66.7
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 1.1e-29 133.3 95 73.7
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 1.9e-29 132.5 115 60.9
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 2.5e-29 132.1 114 60.5
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 5.7e-29 131.0 123 61.8
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 5.7e-29 131.0 117 57.3
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 5.7e-29 131.0 117 59.0
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 9.7e-29 130.2 117 57.3
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 9.7e-29 130.2 105 67.6
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 1.3e-28 129.8 114 59.6
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 1.3e-28 129.8 114 59.6
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 1.3e-28 129.8 114 59.6
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 1.3e-28 129.8 114 59.6
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.3e-28 129.8 104 70.2
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 1.3e-28 129.8 116 58.6
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 1.3e-28 129.8 113 60.2
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 1.3e-28 129.8 114 58.8
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 1.3e-28 129.8 117 58.1
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 1.3e-28 129.8 117 58.1
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 1.7e-28 129.4 114 58.8
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 2.2e-28 129.0 121 53.7
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 2.2e-28 129.0 118 61.9
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 2.2e-28 129.0 118 60.2
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 2.8e-28 128.6 112 57.1
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 2.8e-28 128.6 121 57.9
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 2.8e-28 128.6 113 61.9
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 3.7e-28 128.3 107 64.5
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 3.7e-28 128.3 126 57.1
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 8.2e-28 127.1 113 60.2
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 8.2e-28 127.1 128 58.6
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 1.1e-27 126.7 117 60.7
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 1.4e-27 126.3 112 58.0
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.8e-27 125.9 114 57.0
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 1.8e-27 125.9 108 63.0
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 1.8e-27 125.9 108 58.3
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 1.8e-27 125.9 115 59.1
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 2.4e-27 125.6 117 61.5
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 2.4e-27 125.6 120 57.5
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 2.4e-27 125.6 114 58.8
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 2.4e-27 125.6 124 54.8
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.1e-27 125.2 111 57.7
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 4.1e-27 124.8 120 57.5
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 6.9e-27 124.0 117 64.1
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 9.1e-27 123.6 117 59.0
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 1.2e-26 123.2 120 57.5
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.5e-26 122.9 104 64.4
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 1.5e-26 122.9 119 58.8
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.5e-26 122.9 120 55.8
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.5e-26 122.9 120 55.8
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 2.0e-26 122.5 116 55.2
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 2.0e-26 122.5 104 64.4
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 2.0e-26 122.5 123 54.5
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 3.4e-26 121.7 109 65.1
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 4.5e-26 121.3 98 68.4
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 5.9e-26 120.9 107 58.9
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 7.7e-26 120.6 129 50.4
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 7.7e-26 120.6 113 60.2
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.0e-25 120.2 109 68.8
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 1.0e-25 120.2 118 62.7
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 1.0e-25 120.2 117 54.7
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.3e-25 119.8 108 57.4
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.3e-25 119.8 108 57.4
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 1.3e-25 119.8 112 58.9
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 2.2e-25 119.0 106 68.9
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 2.9e-25 118.6 108 63.0
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 2.9e-25 118.6 116 55.2
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 2.9e-25 118.6 120 55.0
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 5.0e-25 117.9 115 61.7
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 5.0e-25 117.9 115 61.7
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 5.0e-25 117.9 115 61.7
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 8.5e-25 117.1 110 61.8
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 1.1e-24 116.7 118 57.6
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.4e-24 116.3 103 62.1
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 1.4e-24 116.3 113 61.1
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.9e-24 115.9 106 57.5
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.9e-24 115.9 111 53.2
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 2.5e-24 115.5 110 58.2
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 2.5e-24 115.5 113 48.7
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 4.2e-24 114.8 123 53.7
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 4.2e-24 114.8 102 59.8
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 5.5e-24 114.4 111 51.4
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 5.5e-24 114.4 111 51.4
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 5.5e-24 114.4 110 55.5
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 7.2e-24 114.0 115 60.0
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 7.2e-24 114.0 103 61.2
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 1.2e-23 113.2 118 57.6
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 1.6e-23 112.8 111 53.2
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 1.6e-23 112.8 101 59.4
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 2.1e-23 112.5 108 51.9
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 2.7e-23 112.1 112 49.1
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 3.6e-23 111.7 112 50.0
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 4.7e-23 111.3 112 49.1
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 4.7e-23 111.3 112 49.1
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 4.7e-23 111.3 110 52.7
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 6.1e-23 110.9 110 52.7
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 6.1e-23 110.9 110 52.7
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 6.1e-23 110.9 110 52.7
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 6.1e-23 110.9 110 52.7
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 7.9e-23 110.5 122 50.8
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 1.0e-22 110.2 107 51.4
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 1.0e-22 110.2 109 58.7
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 1.8e-22 109.4 112 48.2
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 1.8e-22 109.4 112 48.2
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 2.3e-22 109.0 107 58.9
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 2.3e-22 109.0 107 58.9
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 2.3e-22 109.0 108 52.8
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 2.3e-22 109.0 110 53.6
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 3.0e-22 108.6 117 54.7
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 1.1e-21 106.7 102 56.9
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 2.0e-21 105.9 118 48.3
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 4.4e-21 104.8 108 50.0
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 9.7e-21 103.6 107 56.1
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 1.3e-20 103.2 98 53.1
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 1.3e-20 103.2 117 49.6
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 3.7e-20 101.7 135 45.9
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 8.2e-20 100.5 98 55.1
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.4e-19 99.8 111 50.5
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.4e-19 99.8 111 50.5
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 1.4e-19 99.8 90 54.4
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 4.1e-19 98.2 120 50.0
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 9.1e-19 97.1 148 37.8
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 1.3e-17 93.2 95 49.5
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 2.2e-17 92.4 115 46.1
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 1.1e-16 90.1 155 39.4
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 2.3e-14 82.4 81 54.3
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 5.2e-14 81.3 139 34.5
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 8.8e-14 80.5 64 57.8
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 1.5e-13 79.7 76 53.9
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 2.0e-13 79.3 148 35.8
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 5.7e-13 77.8 109 45.0
AagrBONN_evm.TU.Sc2ySwM_362.1976 Anthoceros agrestis HOM05D003630 ORTHO05D004151 6.5e-09 64.3 57 50.9
Pp3c24_1050 Physcomitrium patens HOM05D003630 ORTHO05D004151 3.2e-08 62.0 150 28.0
SMO147G0175 Selaginella moellendorffii HOM05D002144 ORTHO05D002170 1.4e-06 56.6 89 38.2
Eucgr.D00606 Eucalyptus grandis HOM05D003630 ORTHO05D004151 2.3e-06 55.8 27 85.2
Eucgr.E03257 Eucalyptus grandis HOM05D003630 ORTHO05D004151 8.8e-06 53.9 36 66.7
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 8.8e-06 53.9 124 32.3


User provided reference genes

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