Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 2.5e-163 579.3 455 100.0
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.3e-138 497.3 464 87.3
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 8.2e-138 494.6 456 86.2
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 2.7e-133 479.6 455 86.2
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 3.5e-104 382.9 385 78.2
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 9.5e-102 374.8 388 77.8
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 7.5e-99 365.2 460 70.9
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 1.2e-96 357.8 384 75.0
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.9e-94 350.5 381 76.9
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 4.3e-94 349.4 380 76.6
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.3e-94 349.4 380 76.6
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 9.5e-94 348.2 388 74.0
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.1e-93 347.1 381 76.4
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.8e-93 346.7 381 76.4
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 2.8e-93 346.7 383 74.7
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 4.4e-91 339.3 387 73.1
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 2.2e-90 337.0 383 73.9
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 2.2e-90 337.0 380 74.7
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 4.9e-90 335.9 384 72.9
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.4e-89 334.3 383 74.9
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 1.4e-89 334.3 385 75.3
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 1.9e-89 334.0 382 73.6
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 2.4e-89 333.6 383 72.8
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 3.2e-89 333.2 385 71.2
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 5.4e-89 332.4 385 73.8
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.6e-88 330.9 383 73.4
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 2.1e-88 330.5 383 73.4
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 2.7e-88 330.1 384 74.0
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 2.7e-88 330.1 381 75.6
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 1.0e-87 328.2 358 79.3
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 1.0e-87 328.2 379 75.7
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 2.3e-87 327.0 454 68.5
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 2.3e-87 327.0 384 73.2
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 3.0e-87 326.6 380 70.8
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 3.9e-87 326.2 383 70.5
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 5.1e-87 325.9 384 71.4
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 6.6e-87 325.5 384 70.1
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 1.5e-86 324.3 385 70.1
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 3.3e-86 323.2 384 70.3
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.2e-85 321.2 381 70.9
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.6e-85 320.9 382 74.3
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 2.1e-85 320.5 384 72.7
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 4.7e-85 319.3 383 71.3
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 4.7e-85 319.3 382 69.9
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 1.8e-84 317.4 384 70.3
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.1e-84 316.6 387 72.4
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 5.2e-84 315.8 381 71.4
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.0e-83 313.9 367 76.3
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 2.6e-83 313.5 385 71.9
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 2.6e-83 313.5 381 68.5
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 7.6e-83 312.0 383 70.5
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 9.9e-83 311.6 368 71.2
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.7e-82 310.8 459 64.3
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.7e-82 310.8 380 73.9
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 3.8e-82 309.7 368 70.9
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 4.9e-82 309.3 320 76.9
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 4.9e-82 309.3 384 71.4
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.1e-81 308.1 380 73.9
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.1e-81 308.1 383 71.3
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 1.9e-81 307.4 382 72.5
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 3.2e-81 306.6 351 74.1
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 3.2e-81 306.6 383 71.3
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 5.4e-81 305.8 459 63.8
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 7.1e-81 305.4 320 76.6
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 9.2e-81 305.1 451 65.4
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.2e-80 304.7 354 74.0
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.7e-80 303.5 384 70.3
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 7.8e-80 302.0 451 62.1
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 7.8e-80 302.0 382 70.7
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 7.8e-80 302.0 384 71.4
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.7e-79 300.8 381 69.3
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 1.7e-79 300.8 331 76.4
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 2.3e-79 300.4 383 71.0
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 1.9e-78 297.4 382 68.6
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 1.9e-78 297.4 467 59.1
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 1.9e-78 297.4 456 65.8
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 3.3e-78 296.6 383 70.5
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 1.6e-77 294.3 385 67.8
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 3.6e-77 293.1 383 69.5
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 8.1e-77 292.0 383 68.9
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 1.4e-76 291.2 453 67.3
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 1.4e-76 291.2 385 66.2
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 3.1e-76 290.0 386 66.6
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 5.3e-76 289.3 381 67.7
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 5.3e-76 289.3 387 69.3
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 2.0e-75 287.3 379 71.5
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.9e-74 283.5 385 67.8
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 5.4e-73 279.3 376 67.0
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 7.1e-73 278.9 383 66.1
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 7.8e-72 275.4 382 65.7
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 1.0e-71 275.0 327 74.3
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 8.7e-71 271.9 186 69.9
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 2.5e-70 270.4 347 69.2
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 3.3e-70 270.0 384 67.4
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 9.6e-70 268.5 382 64.7
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 9.0e-68 261.9 388 67.5
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 2.0e-67 260.8 384 61.7
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 4.5e-67 259.6 382 68.1
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 7.6e-67 258.8 366 66.1
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 9.9e-67 258.5 382 65.2
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.2e-66 257.3 322 71.4
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 2.9e-66 256.9 463 62.9
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 6.4e-66 255.8 383 64.0
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 8.4e-66 255.4 388 65.7
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.1e-65 255.0 389 65.3
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 4.2e-65 253.1 391 63.9
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.5e-64 250.0 390 64.6
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.8e-63 247.7 390 63.6
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 2.3e-63 247.3 391 64.7
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 2.3e-63 247.3 391 64.7
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 1.1e-62 245.0 389 64.5
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 1.1e-62 245.0 389 64.5
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 1.1e-62 245.0 389 64.5
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.1e-62 245.0 394 62.4
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 5.6e-62 242.7 390 62.1
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 9.6e-62 241.9 378 62.2
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 1.6e-61 241.1 399 59.6
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 6.9e-60 235.7 389 62.2
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.4e-57 228.0 396 60.1
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 1.6e-56 224.6 387 64.9
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 1.3e-55 221.5 385 63.4
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 3.0e-55 220.3 461 54.7
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 5.1e-55 219.5 388 63.4
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 5.1e-55 219.5 388 63.7
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 5.1e-55 219.5 369 43.4
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 2.5e-54 217.2 329 63.2
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 2.5e-54 217.2 464 60.3
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 5.3e-52 209.5 383 62.9
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 4.2e-49 199.9 388 62.1
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.6e-48 198.0 382 62.3
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 2.1e-48 197.6 293 71.0
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 2.7e-48 197.2 388 61.6
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 2.7e-48 197.2 388 61.6
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 2.7e-48 197.2 284 73.9
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 3.5e-48 196.8 392 54.8
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.8e-47 194.5 385 60.3
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.1e-46 191.8 378 62.2
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 3.3e-46 190.3 384 41.4
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 1.4e-44 184.9 273 71.8
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 1.8e-44 184.5 339 54.3
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 2.6e-43 180.6 396 58.6
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 5.0e-42 176.4 372 60.2
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 4.2e-41 173.3 168 54.8
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 2.7e-40 170.6 330 65.2
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 7.9e-40 169.1 400 56.8
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 2.3e-39 167.5 194 50.0
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 3.9e-39 166.8 193 48.7
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 1.1e-38 165.2 397 57.9
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 7.4e-38 162.5 122 64.8
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.8e-31 141.4 393 50.9
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 2.3e-31 141.0 394 49.5
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 3.0e-31 140.6 278 67.3
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 3.3e-30 137.1 393 45.3
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 7.4e-30 136.0 258 67.8
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 3.1e-28 130.6 402 50.5
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 7.7e-27 125.9 246 75.2
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 2.0e-22 111.3 110 59.1
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 1.4e-20 105.1 249 58.6
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 2.4e-20 104.4 120 50.0
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 4.5e-19 100.1 91 59.3
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 1.5e-17 95.1 101 50.5
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.6e-16 91.7 92 56.5
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 2.1e-16 91.3 193 32.1
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 1.0e-15 89.0 172 40.1
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 4.8e-13 80.1 89 55.1
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 2.7e-11 74.3 53 67.9
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 6.5e-10 69.7 53 64.2
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 6.1e-08 63.2 54 53.7
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.4e-07 62.0 54 51.9
HanXRQChr04g0116951 Helianthus annuus HOM05D004193 ORTHO05D004862 4.4e-06 57.0 43 60.5
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 7.5e-06 56.2 99 45.5


User provided reference genes

Program Settings