Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 3.1e-232 808.1 416 100.0
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.0e-154 549.7 426 70.9
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 8.3e-145 517.7 424 68.9
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 3.4e-138 495.7 296 87.5
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 1.5e-98 364.0 416 54.3
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 2.2e-97 360.1 426 53.3
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.2e-95 354.4 428 51.2
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 1.6e-95 354.0 430 52.1
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 6.0e-95 352.1 428 52.1
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 5.1e-94 349.0 427 50.8
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 5.6e-93 345.5 431 50.3
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 3.4e-90 336.3 419 50.4
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 5.8e-90 335.5 428 49.1
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.3e-89 334.3 430 50.2
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 3.8e-89 332.8 426 49.3
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 1.1e-88 331.3 403 50.6
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 1.9e-88 330.5 417 47.0
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 2.5e-88 330.1 427 50.4
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 5.5e-88 328.9 425 48.2
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 7.1e-88 328.6 425 48.2
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 6.0e-87 325.5 426 49.3
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 6.0e-87 325.5 425 50.1
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 1.0e-86 324.7 412 48.5
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 1.3e-86 324.3 425 49.9
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.8e-86 323.9 427 48.5
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.8e-86 323.9 427 48.5
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 1.3e-84 317.8 425 48.2
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.6e-84 317.4 416 48.1
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 1.8e-83 313.9 425 48.9
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 1.5e-82 310.8 419 47.7
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.0e-82 310.5 461 44.7
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 7.6e-82 308.5 424 44.3
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 1.0e-81 308.1 427 47.1
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 1.3e-81 307.8 410 47.3
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 5.0e-81 305.8 423 47.8
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 8.5e-81 305.1 425 44.7
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.1e-80 304.7 408 48.3
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 2.5e-80 303.5 428 45.3
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 7.2e-80 302.0 401 48.1
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 7.2e-80 302.0 412 46.4
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 1.2e-79 301.2 418 45.7
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 1.2e-79 301.2 371 52.6
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 1.6e-79 300.8 425 45.4
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 1.8e-78 297.4 419 45.1
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 2.3e-78 297.0 424 47.4
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 8.7e-78 295.0 406 44.8
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 2.5e-77 293.5 415 45.8
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 3.3e-77 293.1 431 43.6
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 7.4e-77 292.0 431 43.6
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 2.2e-76 290.4 406 44.8
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 5.3e-75 285.8 518 40.9
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 4.5e-74 282.7 419 44.9
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 5.0e-73 279.3 426 42.7
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 8.5e-73 278.5 378 46.8
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 3.6e-71 273.1 459 41.0
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 6.1e-71 272.3 410 42.7
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.4e-70 271.2 405 45.4
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 3.9e-70 269.6 419 44.4
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 5.7e-69 265.8 419 43.7
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 7.4e-69 265.4 244 61.9
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 1.4e-67 261.2 421 42.0
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 1.8e-67 260.8 286 55.2
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 6.9e-67 258.8 398 42.5
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 6.9e-67 258.8 351 47.6
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 4.5e-66 256.1 406 43.3
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 4.5e-66 256.1 411 43.3
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 1.0e-65 255.0 416 41.1
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 2.2e-65 253.8 251 57.0
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 3.8e-65 253.1 416 42.1
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 6.5e-65 252.3 416 39.9
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.1e-64 251.5 415 40.5
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.4e-64 251.1 418 42.1
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 1.9e-64 250.8 412 39.1
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 4.2e-64 249.6 421 40.9
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 4.2e-64 249.6 421 41.6
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 9.4e-64 248.4 364 44.2
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.7e-63 246.9 407 41.8
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 4.7e-63 246.1 432 39.8
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 1.0e-62 245.0 428 38.1
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 1.0e-62 245.0 415 39.3
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.4e-62 244.6 478 40.2
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 1.4e-62 244.6 419 40.1
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 1.8e-62 244.2 482 38.2
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 1.8e-62 244.2 482 38.2
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 1.1e-61 241.5 415 40.0
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 1.5e-61 241.1 416 38.0
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 4.4e-61 239.6 431 40.4
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 9.7e-61 238.4 377 43.2
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 2.2e-60 237.3 417 38.1
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 3.7e-60 236.5 425 39.1
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 3.7e-60 236.5 431 38.3
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 6.3e-60 235.7 426 36.6
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 1.4e-59 234.6 403 39.5
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 5.3e-59 232.6 421 38.5
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 5.3e-59 232.6 426 37.6
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 9.1e-59 231.9 412 41.0
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 4.5e-58 229.6 431 39.7
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 1.7e-57 227.6 426 36.9
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 2.2e-57 227.3 427 36.3
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 6.5e-57 225.7 420 37.1
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 6.5e-57 225.7 419 38.4
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 1.5e-56 224.6 427 36.3
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 2.5e-56 223.8 405 36.5
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 3.2e-56 223.4 416 36.3
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 3.2e-56 223.4 416 36.3
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 5.5e-56 222.6 416 36.3
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 9.4e-56 221.9 399 40.1
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 1.2e-55 221.5 417 39.3
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 1.6e-55 221.1 416 36.8
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 1.4e-54 218.0 333 43.8
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 1.4e-54 218.0 406 39.2
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 2.3e-54 217.2 269 50.9
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 1.2e-53 214.9 303 43.2
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 1.4e-51 208.0 423 35.5
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 4.1e-51 206.5 410 37.3
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 7.0e-51 205.7 396 37.1
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 9.1e-51 205.3 450 34.0
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.7e-50 203.8 303 45.2
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 4.5e-50 203.0 388 41.0
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.7e-49 201.1 293 43.0
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 8.5e-49 198.7 331 42.0
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 1.2e-47 194.9 419 34.4
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 2.3e-46 190.7 379 38.5
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 4.0e-46 189.9 327 40.4
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.2e-45 188.3 270 43.0
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 4.4e-45 186.4 278 43.9
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 7.5e-45 185.7 135 68.9
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 3.7e-44 183.3 199 50.3
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 8.3e-44 182.2 459 31.8
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 1.8e-43 181.0 325 40.9
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 5.4e-43 179.5 346 37.0
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 5.4e-43 179.5 414 35.0
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 2.3e-41 174.1 322 39.4
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 5.5e-40 169.5 420 33.3
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 1.2e-39 168.3 337 39.5
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 1.6e-39 167.9 246 44.7
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 1.6e-39 167.9 368 36.1
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.0e-38 163.7 433 33.9
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 4.0e-38 163.3 149 61.7
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 1.0e-33 148.7 228 42.5
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 5.0e-33 146.4 138 61.6
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.6e-31 141.4 254 39.0
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 1.8e-30 137.9 112 65.2
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 8.9e-30 135.6 332 35.2
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 2.6e-29 134.0 102 63.7
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 4.4e-29 133.3 175 46.9
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 5.4e-27 126.3 108 69.4
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 1.2e-26 125.2 410 30.7
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 2.7e-26 124.0 595 27.9
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.3e-25 121.7 404 29.7
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 6.8e-22 109.4 77 71.4
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 4.4e-21 106.7 424 28.5
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 1.3e-20 105.1 217 35.5
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.9e-20 104.0 303 33.0
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 1.1e-19 102.1 228 35.5
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.4e-19 101.7 112 59.8
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 7.0e-19 99.4 183 38.8
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 3.3e-16 90.5 109 46.8
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 1.2e-15 88.6 193 36.8
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 1.4e-14 85.1 72 68.1
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 9.9e-13 79.0 172 34.3
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 1.2e-10 72.0 186 31.7
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 3.0e-09 67.4 93 44.1
vmacro10943 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 8.6e-09 65.9 45 68.9
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 7.3e-08 62.8 77 54.5
Sed0009700 Sechium edule HOM05D004223 ORTHO05D372866 7.3e-08 62.8 87 48.3
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 1.1e-06 58.9 86 46.5


User provided reference genes

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