Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 3.1e-128 461.8 238 100.0
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.5e-61 239.6 224 63.8
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 5.0e-54 215.3 133 88.0
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 1.1e-51 207.6 118 91.5
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.3e-46 190.7 120 85.8
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 5.1e-46 188.7 119 84.9
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.5e-45 187.2 119 84.9
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 2.5e-45 186.4 119 84.9
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 5.6e-45 185.3 118 84.7
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 9.5e-45 184.5 121 79.3
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 9.5e-45 184.5 118 84.7
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 1.2e-44 184.1 119 84.0
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.6e-44 183.7 120 83.3
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 6.2e-44 181.8 120 80.8
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 8.1e-44 181.4 108 87.0
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 1.4e-43 180.6 120 80.0
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.8e-43 180.3 116 82.8
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 2.3e-43 179.9 108 86.1
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.3e-43 179.9 157 65.6
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 2.3e-43 179.9 120 80.8
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 2.3e-43 179.9 118 81.4
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 5.2e-43 178.7 118 83.1
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 6.8e-43 178.3 126 77.0
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 6.8e-43 178.3 108 85.2
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 8.9e-43 177.9 108 85.2
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 8.9e-43 177.9 108 85.2
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 8.9e-43 177.9 108 85.2
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 8.9e-43 177.9 120 80.8
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 8.9e-43 177.9 112 86.6
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 8.9e-43 177.9 120 80.0
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 1.5e-42 177.2 118 83.1
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.5e-42 177.2 120 79.2
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.0e-42 176.8 118 80.5
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 2.0e-42 176.8 108 85.2
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 3.4e-42 176.0 122 79.5
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 3.4e-42 176.0 119 81.5
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 4.4e-42 175.6 126 76.2
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 5.8e-42 175.3 116 80.2
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 5.8e-42 175.3 119 79.8
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 7.5e-42 174.9 106 84.9
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 7.5e-42 174.9 119 79.8
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 7.5e-42 174.9 119 79.8
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 7.5e-42 174.9 108 85.2
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 7.5e-42 174.9 118 80.5
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 9.9e-42 174.5 122 78.7
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 9.9e-42 174.5 122 78.7
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 9.9e-42 174.5 106 84.0
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 9.9e-42 174.5 122 78.7
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.3e-41 174.1 116 78.4
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.3e-41 174.1 116 80.2
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 1.3e-41 174.1 118 81.4
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.9e-41 172.9 122 75.4
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 3.7e-41 172.6 118 78.0
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 3.7e-41 172.6 122 77.9
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 3.7e-41 172.6 123 77.2
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 3.7e-41 172.6 116 80.2
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 3.7e-41 172.6 121 78.5
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.7e-41 172.6 122 77.9
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 4.9e-41 172.2 121 74.4
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 4.9e-41 172.2 108 82.4
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 4.9e-41 172.2 119 79.0
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 8.3e-41 171.4 126 75.4
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 1.1e-40 171.0 108 81.5
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-40 170.6 118 78.0
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 2.4e-40 169.9 125 77.6
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 3.2e-40 169.5 119 77.3
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 9.2e-40 167.9 104 82.7
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.2e-39 167.5 100 86.0
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.6e-39 167.2 120 76.7
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 2.1e-39 166.8 118 76.3
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 4.6e-39 165.6 120 75.8
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 4.6e-39 165.6 114 75.4
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.0e-38 164.5 100 84.0
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 1.0e-38 164.5 103 79.6
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.0e-38 164.5 120 76.7
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 1.7e-38 163.7 108 78.7
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 3.0e-38 162.9 99 83.8
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.0e-38 162.9 99 83.8
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.0e-38 162.9 99 83.8
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.0e-38 162.9 99 83.8
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 3.9e-38 162.5 98 80.6
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 5.1e-38 162.2 119 73.9
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 5.1e-38 162.2 104 77.9
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 6.6e-38 161.8 116 75.9
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 6.6e-38 161.8 116 75.9
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 8.6e-38 161.4 116 74.1
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 8.6e-38 161.4 116 74.1
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 8.6e-38 161.4 115 75.7
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.1e-37 161.0 99 82.8
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.5e-37 160.6 103 80.6
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.5e-37 159.8 100 80.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 4.3e-37 159.1 118 73.7
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 4.3e-37 159.1 119 73.9
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 9.5e-37 157.9 121 71.9
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.6e-36 157.1 116 72.4
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 1.6e-36 157.1 126 70.6
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 2.1e-36 156.8 108 71.3
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.8e-36 156.4 116 71.6
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.8e-36 156.4 116 71.6
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 3.6e-36 156.0 120 70.0
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 3.6e-36 156.0 116 71.6
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 3.6e-36 156.0 130 68.5
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 4.7e-36 155.6 104 81.7
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 8.1e-36 154.8 116 71.6
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 1.4e-35 154.1 117 71.8
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.8e-35 153.7 97 78.4
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 1.8e-35 153.7 118 71.2
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 2.4e-35 153.3 106 76.4
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 5.2e-35 152.1 115 69.6
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.2e-34 151.0 108 75.9
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 1.2e-34 151.0 108 68.5
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 2.0e-34 150.2 98 75.5
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.6e-34 149.8 108 75.0
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 4.4e-34 149.1 105 79.0
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 9.9e-34 147.9 116 68.1
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 6.4e-33 145.2 114 69.3
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 8.4e-33 144.8 116 66.4
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 8.4e-33 144.8 116 62.9
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.7e-31 139.8 85 82.4
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 1.0e-30 137.9 103 73.8
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 2.5e-29 133.3 106 70.8
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 3.3e-29 132.9 100 70.0
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 6.9e-27 125.2 111 58.6
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 9.0e-27 124.8 106 61.3
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 7.6e-26 121.7 87 75.9
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.3e-25 120.9 83 78.3
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 5.4e-24 115.5 92 70.7
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 5.4e-24 115.5 92 70.7
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 4.6e-23 112.5 67 83.6
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.5e-21 107.5 67 79.1
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 3.3e-21 106.3 66 78.8
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 4.3e-21 105.9 69 76.8
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 3.6e-20 102.8 69 75.4
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 8.1e-20 101.7 97 51.5
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.8e-19 100.5 73 64.4
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 3.4e-18 96.3 105 58.1
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 9.9e-18 94.7 80 63.8
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 8.4e-17 91.7 56 80.4
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 5.4e-16 89.0 85 60.0
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 5.4e-16 89.0 56 80.4
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-15 87.8 73 64.4
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 6.0e-15 85.5 87 55.2
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.0e-14 83.2 85 58.8
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 2.1e-12 77.0 116 45.7
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.4e-11 74.3 102 44.1
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 5.3e-11 72.4 82 52.4
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 6.9e-11 72.0 53 67.9
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 2.0e-10 70.5 66 53.0
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 4.9e-09 65.9 120 34.2
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 4.2e-08 62.8 40 80.0
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-07 61.2 76 47.4
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 2.7e-07 60.1 103 41.7
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 3.5e-07 59.7 43 69.8
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 6.0e-07 58.9 63 52.4
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 1.0e-06 58.2 96 41.7
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.3e-06 57.8 38 73.7


User provided reference genes

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