Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 2.5e-173 612.1 321 100.0
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 5.2e-155 551.2 321 91.3
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 5.6e-149 531.2 322 89.1
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 1.1e-125 453.8 320 78.1
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 3.2e-120 435.6 320 74.4
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 3.1e-83 312.8 299 59.2
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 7.7e-82 308.1 311 58.8
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 2.0e-77 293.5 296 57.8
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 4.4e-77 292.4 296 55.1
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 3.7e-76 289.3 322 54.0
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 5.3e-75 285.4 301 55.8
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 5.0e-73 278.9 303 55.1
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 1.1e-72 277.7 301 54.2
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 2.5e-72 276.6 300 54.7
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 4.2e-72 275.8 299 55.5
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 9.4e-72 274.6 297 53.9
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 2.7e-71 273.1 299 56.2
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.2e-69 267.7 291 54.3
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 1.7e-68 263.8 313 52.1
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.7e-68 263.8 306 50.3
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 3.7e-68 262.7 314 52.9
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 4.8e-68 262.3 320 51.6
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 4.8e-68 262.3 306 52.9
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 8.3e-68 261.5 317 51.7
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.4e-67 260.8 315 51.7
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.1e-67 259.2 306 52.6
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 7.0e-67 258.5 305 52.1
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.6e-66 257.3 299 49.2
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 5.9e-66 255.4 316 51.3
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 7.7e-66 255.0 319 53.3
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 2.3e-65 253.4 298 50.0
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 6.6e-65 251.9 302 48.3
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 8.6e-65 251.5 301 49.2
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 1.5e-64 250.8 303 50.8
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 7.2e-64 248.4 303 52.8
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 2.1e-63 246.9 301 51.2
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.8e-63 246.5 318 49.1
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 2.8e-63 246.5 308 46.8
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 4.7e-63 245.7 299 48.8
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 4.7e-63 245.7 299 48.2
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 8.0e-63 245.0 298 47.3
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 1.4e-62 244.2 298 48.7
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 2.3e-62 243.4 301 50.8
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 2.3e-62 243.4 304 48.4
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 2.3e-62 243.4 301 49.5
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 8.9e-62 241.5 295 50.5
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.4e-61 239.6 304 50.3
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 4.4e-61 239.2 321 48.6
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.3e-60 237.7 320 48.4
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 2.8e-60 236.5 306 51.3
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 3.7e-60 236.1 308 48.4
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 1.1e-59 234.6 315 48.9
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 3.2e-59 233.0 283 49.1
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 4.1e-59 232.6 310 44.5
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 1.6e-58 230.7 312 47.1
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.0e-58 230.3 291 47.8
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 2.0e-58 230.3 290 47.9
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 2.7e-58 229.9 318 47.5
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 4.5e-58 229.2 297 46.5
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 4.5e-58 229.2 311 44.1
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 1.1e-56 224.6 305 46.2
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 1.9e-56 223.8 291 48.5
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.9e-56 223.8 318 44.7
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 3.3e-56 223.0 348 42.8
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 4.3e-56 222.6 298 46.0
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 5.6e-56 222.2 306 46.4
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 5.6e-56 222.2 311 47.9
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 7.3e-56 221.9 297 46.1
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 2.1e-55 220.3 308 46.8
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 8.0e-55 218.4 306 46.4
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 1.0e-54 218.0 307 43.3
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 1.8e-54 217.2 314 43.9
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 2.3e-54 216.9 341 44.0
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 5.2e-54 215.7 312 42.9
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 8.9e-54 214.9 314 43.3
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 1.2e-53 214.5 314 43.6
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 2.0e-53 213.8 318 42.1
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 2.6e-53 213.4 312 42.6
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 2.6e-53 213.4 315 43.2
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 2.6e-53 213.4 326 43.6
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 5.8e-53 212.2 307 44.0
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 9.8e-53 211.5 318 45.0
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 1.3e-52 211.1 306 45.4
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 1.3e-52 211.1 257 48.2
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 1.7e-52 210.7 310 41.6
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 2.2e-52 210.3 318 44.0
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 2.9e-52 209.9 302 42.4
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 3.7e-52 209.5 244 49.2
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.7e-52 209.5 285 43.2
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 3.7e-52 209.5 297 44.8
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 4.9e-52 209.1 314 42.7
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 4.9e-52 209.1 314 42.7
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 8.3e-52 208.4 302 43.7
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.1e-51 208.0 295 42.4
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.1e-51 208.0 313 43.1
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.1e-51 208.0 313 43.1
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 2.4e-51 206.8 283 45.9
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 4.1e-51 206.1 283 43.8
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 4.1e-51 206.1 318 44.3
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 4.1e-51 206.1 318 44.3
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 9.2e-51 204.9 303 44.6
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.2e-50 204.5 298 46.6
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 1.2e-50 204.5 298 46.6
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.2e-50 204.5 343 42.3
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 4.6e-50 202.6 282 45.0
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 5.0e-49 199.1 299 42.8
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 1.2e-45 188.0 297 41.4
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 4.4e-45 186.0 301 43.2
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 4.4e-45 186.0 310 39.0
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.9e-44 183.3 296 40.2
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 1.1e-43 181.4 262 45.4
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 1.1e-43 181.4 290 40.7
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 1.6e-42 177.6 200 55.5
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 2.1e-42 177.2 303 40.3
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 3.5e-42 176.4 303 40.3
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 5.6e-40 169.1 317 40.7
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 8.1e-39 165.2 278 41.0
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.1e-38 164.9 278 41.0
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 8.9e-38 161.8 302 39.7
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 7.3e-32 142.1 232 39.2
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 1.2e-29 134.8 173 49.1
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 7.1e-27 125.6 286 33.9
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 7.3e-24 115.5 179 43.6
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.1e-22 111.7 137 48.2
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 5.6e-16 89.4 105 54.3
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 9.6e-16 88.6 235 30.2
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 3.4e-13 80.1 118 40.7
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.7e-10 70.5 165 33.9


User provided reference genes

Program Settings