Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 8.1e-54 213.8 131 100.0
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 1.7e-48 196.1 132 95.5
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 2.4e-45 185.7 133 92.5
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 7.6e-36 154.1 142 76.1
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 1.8e-29 132.9 124 75.8
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 1.3e-27 126.7 125 73.6
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 2.9e-27 125.6 134 70.9
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 1.4e-26 123.2 119 72.3
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 1.0e-24 117.1 118 71.2
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 1.3e-24 116.7 125 67.2
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 1.5e-23 113.2 120 72.5
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 5.6e-23 111.3 136 64.0
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 7.4e-23 110.9 121 73.6
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 7.4e-23 110.9 161 58.4
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 4.8e-22 108.2 93 80.6
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 6.9e-21 104.4 101 73.3
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 6.9e-21 104.4 123 69.1
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 6.9e-21 104.4 121 68.6
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 1.2e-20 103.6 124 69.4
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 2.6e-20 102.4 94 76.6
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 2.6e-20 102.4 94 76.6
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 3.4e-20 102.1 98 79.6
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 4.5e-20 101.7 97 78.4
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 7.6e-20 100.9 125 65.6
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 7.6e-20 100.9 125 65.6
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 7.6e-20 100.9 121 67.8
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 1.3e-19 100.1 97 80.4
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 2.9e-19 99.0 98 72.4
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 2.5e-18 95.9 127 62.2
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 2.5e-18 95.9 127 62.2
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 4.2e-18 95.1 109 67.9
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 4.2e-18 95.1 131 61.8
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 5.5e-18 94.7 173 50.9
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 7.1e-18 94.4 97 76.3
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 7.1e-18 94.4 106 74.5
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 4.6e-17 91.7 119 64.7
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 1.0e-16 90.5 122 60.7
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 3.0e-16 89.0 129 63.6
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 5.1e-16 88.2 74 58.1
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.1e-15 87.0 104 69.2
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 1.1e-15 87.0 108 65.7
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 1.1e-15 87.0 92 77.2
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 1.9e-15 86.3 127 62.2
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 2.5e-15 85.9 135 58.5
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 3.3e-15 85.5 87 74.7
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 5.7e-15 84.7 116 67.2
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 7.4e-15 84.3 109 68.8
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 7.4e-15 84.3 110 64.5
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 1.3e-14 83.6 123 63.4
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 2.1e-14 82.8 127 59.1
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 2.1e-14 82.8 88 75.0
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 2.1e-14 82.8 87 72.4
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 2.8e-14 82.4 108 64.8
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 3.7e-14 82.0 108 64.8
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 6.3e-14 81.3 114 59.6
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 1.1e-13 80.5 86 77.9
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 1.1e-13 80.5 102 68.6
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 3.1e-13 79.0 87 75.9
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 3.1e-13 79.0 87 75.9
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 3.1e-13 79.0 113 61.9
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 3.1e-13 79.0 121 62.8
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 6.9e-13 77.8 130 58.5
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 2.0e-12 76.3 87 74.7
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 2.6e-12 75.9 95 70.5
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.4e-12 75.5 114 61.4
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 3.4e-12 75.5 128 54.7
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 1.0e-11 73.9 69 53.6
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 1.0e-11 73.9 95 69.5
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 1.3e-11 73.6 87 73.6
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 1.3e-11 73.6 87 73.6
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 2.9e-11 72.4 95 68.4
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 2.9e-11 72.4 70 55.7
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 6.5e-11 71.2 118 58.5
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 6.5e-11 71.2 95 65.3
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 8.4e-11 70.9 82 74.4
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 1.9e-10 69.7 74 48.6
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 5.5e-10 68.2 105 61.9
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 6.1e-09 64.7 111 59.5
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 7.9e-09 64.3 55 50.9
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 1.3e-08 63.5 129 53.5
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 1.8e-08 63.2 112 57.1
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 1.8e-08 63.2 112 58.0
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 1.8e-08 63.2 42 69.0
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 2.3e-08 62.8 114 60.5
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 3.0e-08 62.4 40 65.0
Sed0017721 Sechium edule HOM05D007781 ORTHO05D009769 1.5e-07 60.1 41 61.0
vmacro00338 Vaccinium macrocarpon HOM05D007781 ORTHO05D002106 2.5e-07 59.3 49 53.1
vmacro14163 Vaccinium macrocarpon HOM05D007781 ORTHO05D009769 2.5e-07 59.3 41 58.5
DCAR_008280 Daucus carota HOM05D002138 ORTHO05D002106 7.4e-07 57.8 52 48.1
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 1.3e-06 57.0 100 56.0
Cfa000439 Carpinus fangiana HOM05D007781 ORTHO05D009769 1.6e-06 56.6 93 35.5
TAR627G0773 Trochodendron aralioides HOM05D002138 ORTHO05D002106 1.6e-06 56.6 98 61.2
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 3.7e-06 55.5 113 58.4


User provided reference genes

Program Settings