Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.4e-195 686.0 325 100.0
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 5.4e-192 674.1 325 97.5
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 3.5e-191 671.4 325 96.9
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 3.3e-181 638.3 326 92.6
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 8.1e-180 633.6 325 91.7
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 2.5e-173 612.1 322 88.8
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 1.6e-172 609.4 324 87.0
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 1.8e-171 605.9 330 88.5
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 5.3e-171 604.4 326 87.1
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 1.2e-170 603.2 321 88.8
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.5e-170 602.8 316 90.2
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 2.6e-170 602.1 325 87.1
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 4.5e-170 601.3 321 86.3
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 9.9e-170 600.1 325 85.8
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 1.3e-169 599.7 329 85.7
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 1.3e-169 599.7 315 87.9
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 3.8e-169 598.2 322 87.3
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 1.1e-168 596.7 327 85.6
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 3.2e-168 595.1 314 87.6
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 3.2e-168 595.1 323 86.1
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 7.1e-168 594.0 322 86.6
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 9.3e-168 593.6 314 87.6
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 9.3e-168 593.6 330 84.8
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 9.3e-168 593.6 324 85.5
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.2e-167 593.2 316 88.6
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 1.2e-167 593.2 325 84.6
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.2e-167 593.2 316 87.0
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 2.1e-167 592.4 309 87.1
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 3.5e-167 591.7 314 86.9
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 6.0e-167 590.9 314 86.9
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 7.9e-167 590.5 329 84.5
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.0e-166 590.1 329 84.5
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.0e-166 590.1 316 85.8
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.3e-166 589.7 315 84.8
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.8e-166 589.3 318 86.2
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 2.3e-166 589.0 322 83.2
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 2.3e-166 589.0 314 86.9
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 3.0e-166 588.6 313 86.6
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 3.9e-166 588.2 327 84.4
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.9e-166 588.2 327 84.4
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 3.9e-166 588.2 314 86.0
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 6.7e-166 587.4 323 86.4
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 6.7e-166 587.4 323 86.7
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.7e-166 587.4 317 85.5
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 8.7e-166 587.0 323 86.7
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 8.7e-166 587.0 313 86.6
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.1e-165 586.6 327 84.1
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 1.9e-165 585.9 314 85.4
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.3e-165 585.1 329 83.9
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 3.3e-165 585.1 321 85.7
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 4.3e-165 584.7 322 83.5
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 7.4e-165 583.9 319 82.8
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 7.4e-165 583.9 325 83.4
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 7.4e-165 583.9 318 85.2
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 9.6e-165 583.6 315 87.0
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 2.1e-164 582.4 315 87.0
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 2.1e-164 582.4 323 84.8
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 2.1e-164 582.4 318 86.2
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 2.1e-164 582.4 316 85.4
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 3.7e-164 581.6 318 86.5
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 4.8e-164 581.3 309 86.7
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 6.2e-164 580.9 326 83.7
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 8.1e-164 580.5 311 86.2
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 1.1e-163 580.1 322 82.6
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 1.4e-163 579.7 321 82.6
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 1.4e-163 579.7 321 82.6
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 2.4e-163 578.9 313 84.7
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 4.0e-163 578.2 322 83.9
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 4.0e-163 578.2 322 82.9
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 9.0e-163 577.0 322 83.9
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 9.0e-163 577.0 314 85.4
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 9.0e-163 577.0 323 83.0
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 2.6e-162 575.5 325 83.1
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 3.4e-162 575.1 307 85.7
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 4.5e-162 574.7 315 84.1
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 7.6e-162 573.9 321 83.2
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 7.6e-162 573.9 321 83.2
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 7.6e-162 573.9 321 83.2
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 1.0e-161 573.5 304 88.5
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.7e-161 572.8 314 85.4
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 3.8e-161 571.6 326 81.6
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 4.9e-161 571.2 314 84.1
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 4.9e-161 571.2 314 84.1
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 6.5e-161 570.9 383 72.3
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 6.5e-161 570.9 330 81.8
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 1.9e-160 569.3 314 83.1
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 1.9e-160 569.3 319 83.7
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 2.5e-160 568.9 319 82.8
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 1.2e-159 566.6 314 84.4
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 1.6e-159 566.2 314 84.4
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 2.1e-159 565.8 321 81.9
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 2.1e-159 565.8 321 81.9
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 7.9e-159 563.9 323 80.8
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 7.9e-159 563.9 325 83.7
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 1.5e-157 559.7 325 80.9
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 2.8e-156 555.4 322 78.6
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 2.8e-156 555.4 324 77.8
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 1.1e-155 553.5 344 75.9
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 6.9e-155 550.8 324 80.2
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 6.9e-155 550.8 323 79.9
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 1.7e-153 546.2 325 78.8
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 6.5e-153 544.3 313 80.5
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 6.5e-153 544.3 321 79.4
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 1.9e-152 542.7 321 79.1
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 1.3e-148 530.0 296 82.4
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 5.0e-145 518.1 307 76.5
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 8.5e-145 517.3 321 74.5
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.6e-143 513.1 294 78.6
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 3.6e-143 511.9 279 83.5
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.3e-142 509.2 304 79.9
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 3.7e-140 501.9 308 74.4
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 6.9e-139 497.7 263 86.7
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 4.2e-136 488.4 267 85.0
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 3.3e-133 478.8 314 69.4
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 2.4e-131 472.6 338 68.0
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 2.5e-128 462.6 312 67.3
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 5.5e-128 461.5 309 67.6
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 4.7e-127 458.4 307 67.8
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 4.7e-127 458.4 307 67.8
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 8.2e-124 447.6 250 80.8
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 2.8e-116 422.5 311 60.1
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.4e-115 420.2 231 85.3
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 4.7e-103 378.6 315 56.8
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 1.5e-101 373.6 246 70.3
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 3.6e-95 352.4 215 76.3
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 3.9e-89 332.4 316 51.3
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 9.5e-80 301.2 343 43.7
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 5.8e-69 265.4 360 38.6
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 4.3e-56 222.6 123 81.3
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.8e-33 147.5 82 84.1
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 4.8e-31 139.4 89 77.5
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 6.9e-22 109.0 84 65.5
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 6.5e-20 102.4 66 74.2
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 6.3e-15 85.9 64 67.2
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 1.1e-14 85.1 47 76.6
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 2.0e-13 80.9 41 82.9
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 2.6e-13 80.5 42 76.2
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 2.6e-08 63.9 42 61.9


User provided reference genes

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