Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 0.0e+00 1726.5 902 100.0
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 0.0e+00 1498.8 903 89.3
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 0.0e+00 1464.5 958 84.1
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 0.0e+00 1338.9 935 78.8
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 0.0e+00 1162.1 904 72.7
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 4.7e-270 934.9 924 58.5
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 4.4e-268 928.3 915 58.5
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.3e-267 926.8 925 58.8
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 2.1e-262 909.4 928 58.6
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 9.9e-252 874.0 937 56.7
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 1.2e-249 867.1 934 55.9
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 4.3e-247 858.6 916 56.9
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 2.1e-246 856.3 944 55.5
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 4.4e-244 848.6 962 55.1
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 4.9e-243 845.1 800 60.1
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 2.1e-241 839.7 926 55.4
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 5.1e-240 835.1 941 55.4
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 3.4e-236 822.4 930 55.1
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 7.6e-236 821.2 919 55.4
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 9.9e-236 820.8 964 53.5
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.9e-235 819.3 933 54.4
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.4e-234 817.0 928 54.7
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 3.5e-233 812.4 938 55.1
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.8e-232 810.1 934 54.2
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 3.9e-232 808.9 971 52.6
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 6.7e-232 808.1 959 52.5
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 1.1e-231 807.4 945 53.8
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 6.2e-230 801.6 965 53.4
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 8.1e-230 801.2 919 54.5
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 3.1e-229 799.3 929 53.8
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.1e-226 788.1 999 50.7
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 3.5e-225 785.8 963 52.0
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 1.8e-224 783.5 988 51.1
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 2.3e-224 783.1 915 53.3
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.5e-223 780.4 998 49.9
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 1.9e-223 780.0 909 53.2
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 5.7e-223 778.5 928 52.3
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.7e-223 778.5 903 54.2
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 2.1e-222 776.5 997 50.4
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 1.1e-221 774.2 937 52.7
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-221 773.9 928 52.2
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 5.9e-220 768.5 945 51.7
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.0e-219 767.7 1004 49.5
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.7e-219 766.9 1004 49.6
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.9e-219 766.1 943 52.2
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 6.7e-216 755.0 924 51.7
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.7e-216 755.0 930 51.6
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 4.3e-215 752.3 933 51.8
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.6e-214 750.4 997 48.8
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 8.2e-214 748.0 1007 47.7
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 2.4e-213 746.5 1004 48.4
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 4.1e-213 745.7 987 48.6
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 3.4e-212 742.7 1008 48.4
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.0e-211 741.1 832 54.8
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.4e-210 737.3 938 51.3
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 7.9e-209 731.5 1109 45.5
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.4e-208 730.7 929 50.9
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.8e-208 730.3 980 48.4
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.5e-207 727.2 930 51.5
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 4.4e-207 725.7 1046 46.7
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 9.1e-205 718.0 990 47.9
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.2e-204 717.6 928 50.6
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.6e-204 716.5 928 50.6
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 5.9e-204 715.3 1045 47.5
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 7.7e-204 714.9 757 56.0
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 1.0e-203 714.5 919 50.5
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.3e-203 714.1 915 51.7
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 2.5e-202 709.9 988 47.5
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 9.4e-202 708.0 944 49.5
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 7.9e-201 704.9 946 48.5
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 1.4e-200 704.1 840 52.1
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 3.9e-200 702.6 966 46.9
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 9.7e-199 698.0 943 48.6
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 2.9e-195 686.4 938 48.0
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.5e-194 684.1 920 48.2
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.4e-192 677.6 806 50.6
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 1.1e-189 667.9 919 46.8
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 1.8e-189 667.2 936 46.7
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 7.7e-188 661.8 866 49.1
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 7.7e-188 661.8 937 46.9
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.8e-187 659.4 941 47.0
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 5.0e-187 659.1 942 46.7
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 1.5e-186 657.5 936 47.0
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 3.2e-186 656.4 944 47.0
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 4.2e-186 656.0 1043 45.1
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 3.6e-185 652.9 874 47.9
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 3.6e-185 652.9 931 46.8
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 4.7e-185 652.5 949 46.0
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.8e-184 650.6 798 49.1
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 2.3e-184 650.2 938 46.6
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 3.0e-184 649.8 977 46.1
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 8.8e-184 648.3 872 47.7
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 4.4e-183 646.0 934 46.7
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 9.8e-183 644.8 973 46.0
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 2.2e-182 643.7 816 49.3
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 2.8e-182 643.3 929 46.3
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 2.8e-182 643.3 929 46.3
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 4.8e-182 642.5 1035 44.3
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 8.3e-182 641.7 854 47.7
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 3.1e-181 639.8 963 45.6
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 4.1e-181 639.4 923 47.0
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 7.0e-181 638.6 942 45.6
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 2.0e-180 637.1 960 45.3
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.0e-179 634.8 941 45.4
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 4.7e-177 625.9 961 44.8
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 6.1e-177 625.5 1009 43.7
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 5.2e-176 622.5 893 46.1
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 1.5e-175 620.9 999 43.5
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 6.3e-174 615.5 928 44.0
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.4e-173 613.6 873 46.5
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.4e-173 613.6 812 48.6
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 6.6e-171 605.5 940 45.0
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 3.6e-169 599.7 814 49.5
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.4e-168 597.8 841 46.1
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 4.0e-168 596.3 841 46.0
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 3.4e-167 593.2 927 44.3
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 7.5e-167 592.0 921 44.4
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 1.7e-166 590.9 952 44.1
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 5.4e-165 585.9 917 44.1
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.0e-163 581.6 907 43.2
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 3.9e-163 579.7 943 43.1
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 6.6e-163 578.9 779 47.6
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 2.8e-161 573.5 921 44.8
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 8.3e-158 562.0 922 43.8
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 9.8e-151 538.5 825 43.6
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 9.5e-146 521.9 965 40.4
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.1e-144 518.5 936 40.3
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.2e-124 451.8 888 38.7
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 4.5e-119 433.3 988 36.3
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.1e-106 392.1 537 47.1
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 1.9e-106 391.3 1092 32.9
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 6.9e-104 382.9 980 32.9
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 6.9e-104 382.9 980 32.9
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 7.9e-100 369.4 904 34.2
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 3.3e-98 364.0 684 39.0
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 2.2e-97 361.3 388 55.7
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 5.5e-93 346.7 328 57.6
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.2e-78 298.1 299 56.5
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 4.7e-76 290.4 382 46.3
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 6.5e-70 270.0 1008 27.7
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 5.4e-64 250.4 380 46.1
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.6e-63 248.8 384 43.8
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 1.0e-62 246.1 488 40.4
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.7e-62 245.4 252 56.7
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 2.2e-57 228.4 263 49.4
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 7.0e-48 196.8 139 74.1
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.5e-37 161.8 227 49.3
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 1.2e-34 152.9 478 31.6
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.3e-33 149.4 193 47.2
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.9e-32 145.6 213 48.8
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.1e-32 143.7 92 79.3
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 9.5e-29 133.3 174 47.1
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.6e-28 132.5 237 36.7
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 3.4e-26 124.8 85 74.1
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 2.2e-25 122.1 171 42.7
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 6.0e-23 114.0 79 73.4
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.0e-22 113.2 126 51.6
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 8.1e-20 103.6 66 78.8
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 4.0e-19 101.3 131 47.3
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 4.0e-19 101.3 118 50.0
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 5.2e-19 100.9 89 57.3
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 9.0e-19 100.1 87 63.2
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 1.5e-18 99.4 70 71.4
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 5.8e-18 97.4 57 87.7
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 2.2e-17 95.5 89 55.1
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 1.2e-15 89.7 84 58.3
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.3e-14 86.3 116 44.0
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 6.6e-14 84.0 59 76.3
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 1.5e-13 82.8 97 50.5
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 3.3e-13 81.6 119 42.9
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 5.6e-13 80.9 84 48.8
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.8e-12 78.6 143 45.5
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 3.6e-12 78.2 89 50.6
TAR624G1003 Trochodendron aralioides HOM05D003782 ORTHO05D004361 4.8e-12 77.8 106 54.7
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.4e-11 75.5 92 47.8
TAR626G0068 Trochodendron aralioides HOM05D003782 ORTHO05D004361 2.4e-11 75.5 140 45.0
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 2.4e-11 75.5 74 55.4
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 9.0e-11 73.6 66 59.1
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 1.2e-10 73.2 126 38.1
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 2.2e-09 68.9 45 80.0
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 2.7e-07 62.0 62 51.6
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 1.8e-06 59.3 60 46.7
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 5.1e-06 57.8 43 58.1
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 8.7e-06 57.0 51 60.8


User provided reference genes

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