Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 6.4e-254 880.2 419 100.0
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 4.0e-240 834.3 419 94.7
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 5.5e-229 797.3 419 90.0
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 9.0e-216 753.4 422 87.7
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 2.2e-190 669.1 389 77.9
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 2.7e-188 662.1 417 74.6
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 2.7e-188 662.1 400 76.2
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 2.3e-187 659.1 408 74.3
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 5.2e-187 657.9 400 77.2
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 2.0e-186 656.0 400 76.8
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 4.4e-186 654.8 401 76.8
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 4.4e-186 654.8 401 76.6
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 1.3e-185 653.3 406 74.6
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 1.3e-185 653.3 401 75.8
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 2.8e-185 652.1 412 75.7
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 8.3e-185 650.6 408 74.3
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 3.1e-184 648.7 411 73.7
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 7.0e-184 647.5 411 73.2
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 4.5e-183 644.8 413 74.8
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.3e-182 643.3 406 71.7
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.7e-182 642.9 386 76.2
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 4.2e-181 638.3 409 73.1
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.2e-180 636.7 414 72.7
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 6.1e-180 634.4 413 71.9
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 5.2e-179 631.3 409 72.4
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 8.8e-179 630.6 400 72.0
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 2.6e-178 629.0 403 73.7
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 4.4e-178 628.2 410 72.2
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 1.3e-177 626.7 399 72.7
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 2.2e-177 625.9 418 71.1
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 4.9e-177 624.8 423 69.5
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 1.1e-176 623.6 396 72.5
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 1.8e-176 622.9 394 71.3
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 3.1e-176 622.1 383 74.9
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 5.4e-176 621.3 396 73.0
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 7.0e-176 620.9 407 72.0
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 1.6e-175 619.8 401 71.8
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 1.6e-175 619.8 391 72.4
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 2.0e-175 619.4 406 71.2
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 5.9e-175 617.8 406 70.4
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 5.9e-175 617.8 395 73.2
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 7.8e-175 617.5 418 71.3
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.0e-174 617.1 405 70.9
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 1.3e-174 616.7 387 75.2
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 1.7e-174 616.3 404 71.3
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 1.7e-174 616.3 381 73.8
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 2.9e-174 615.5 380 73.7
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 5.0e-174 614.8 410 70.5
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 5.0e-174 614.8 390 73.3
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 6.6e-174 614.4 388 72.7
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 6.6e-174 614.4 418 69.4
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 1.5e-173 613.2 409 70.7
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 1.9e-173 612.8 415 71.1
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 3.3e-173 612.1 375 74.4
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 4.3e-173 611.7 388 73.5
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 1.2e-172 610.1 409 70.4
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 3.6e-172 608.6 408 69.6
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 3.6e-172 608.6 408 69.6
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 3.6e-172 608.6 385 73.5
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 1.8e-171 606.3 392 71.7
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 3.0e-171 605.5 408 70.1
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 4.0e-171 605.1 413 69.0
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 4.0e-171 605.1 414 68.8
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 6.8e-171 604.4 410 70.2
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 8.9e-171 604.0 413 68.0
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 1.2e-170 603.6 400 71.5
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 5.7e-170 601.3 430 67.0
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 9.8e-170 600.5 401 71.1
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 2.2e-169 599.4 434 67.3
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 6.4e-169 597.8 414 68.4
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 1.4e-168 596.7 405 70.1
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 4.1e-168 595.1 434 67.1
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 4.1e-168 595.1 375 74.7
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 1.6e-167 593.2 368 74.7
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.7e-166 589.7 445 66.3
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 3.9e-166 588.6 346 78.0
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.1e-165 587.0 414 68.6
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 5.6e-165 584.7 391 69.1
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 1.6e-164 583.2 411 65.9
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 2.1e-164 582.8 413 68.3
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.0e-163 580.5 405 67.9
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.4e-160 570.1 428 65.4
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 1.9e-157 559.7 378 69.3
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 9.5e-157 557.4 355 72.4
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 3.4e-154 548.9 414 64.5
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 2.9e-153 545.8 414 64.0
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 1.3e-150 537.0 382 65.7
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 2.8e-148 529.3 411 65.5
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 3.5e-143 512.3 417 61.4
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 1.3e-142 510.4 339 69.6
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 1.1e-141 507.3 378 61.4
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 6.9e-139 498.0 376 62.2
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 4.3e-133 478.8 391 60.1
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 2.6e-130 469.5 405 60.2
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 9.9e-130 467.6 310 71.0
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.2e-129 466.5 358 60.1
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 1.9e-128 463.4 299 72.6
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 3.3e-125 452.6 283 72.4
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 4.8e-124 448.7 286 73.4
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 1.1e-120 437.6 394 56.9
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 1.9e-117 426.8 401 51.9
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 3.3e-117 426.0 413 50.1
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.5e-98 364.0 258 70.2
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 7.4e-93 345.1 245 66.9
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 9.4e-88 328.2 278 55.8
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 9.7e-85 318.2 413 42.6
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 1.4e-83 314.3 179 79.9
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 9.1e-83 311.6 455 42.4
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 2.0e-82 310.5 305 54.1
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.2e-80 302.0 167 82.0
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.2e-80 302.0 167 82.0
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 8.0e-79 298.5 394 41.9
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.8e-68 262.7 146 82.2
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 1.8e-54 217.6 214 56.1
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 1.7e-52 211.1 127 80.3
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.7e-50 203.8 140 65.0
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.0e-45 187.6 99 83.8
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 1.4e-43 181.4 298 35.2
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 7.0e-43 179.1 123 65.0
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.2e-39 168.3 111 72.1
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 2.1e-39 167.5 85 88.2
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 1.8e-38 164.5 100 73.0
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 1.4e-35 154.8 89 75.3
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 2.5e-32 144.1 88 70.5
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 4.0e-30 136.7 100 59.0
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 3.5e-26 123.6 152 48.7
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 3.9e-25 120.2 201 40.8
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 1.5e-16 91.7 79 53.2
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 2.9e-12 77.4 362 26.0
HanXRQChr09g0256871 Helianthus annuus HOM05D002999 ORTHO05D003137 8.4e-12 75.9 346 24.3
HanXRQChr15g0466521 Helianthus annuus HOM05D002999 ORTHO05D003137 8.4e-12 75.9 346 24.0
HanXRQChr00c0537g0575611 Helianthus annuus HOM05D002999 ORTHO05D003137 1.1e-11 75.5 346 24.3
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 5.4e-11 73.2 343 22.4
Potri.014G136000 Populus trichocarpa HOM05D002999 ORTHO05D003137 5.4e-11 73.2 355 25.1
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 7.1e-11 72.8 350 23.7
ECA247G2129 Erigeron canadensis HOM05D002999 ORTHO05D003137 9.3e-11 72.4 349 23.8
AUR62034587 Chenopodium quinoa HOM05D002999 ORTHO05D003137 1.6e-10 71.6 380 22.9
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 2.7e-10 70.9 314 22.9
Aqoxy2G03169 Aquilegia oxysepala HOM05D002999 ORTHO05D003137 3.5e-10 70.5 351 24.5
AUR62036682 Chenopodium quinoa HOM05D002999 ORTHO05D003137 4.6e-10 70.1 380 22.9
SGA_v2.0_scaffold142G35668 Striga asiatica HOM05D002999 ORTHO05D003137 4.6e-10 70.1 346 23.1
unitig_749.g14054 Utricularia gibba HOM05D002999 ORTHO05D003137 7.9e-10 69.3 347 23.9
Hma1.2p1_0643F.1_g194600 Hydrangea macrophylla HOM05D002999 ORTHO05D003137 3.0e-09 67.4 347 22.2
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 6.7e-09 66.2 66 51.5
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 8.7e-09 65.9 208 25.5
Lalb_Chr02g0142981 Lupinus albus HOM05D002999 ORTHO05D003137 1.1e-08 65.5 346 23.7
SalBow2G3192 Salvia bowleyana HOM05D002999 ORTHO05D003137 1.5e-08 65.1 372 22.0
Ciclev10019830m.g Citrus clementina HOM05D002999 ORTHO05D003137 1.9e-08 64.7 346 23.7
PSO675G6008 Papaver somniferum HOM05D003825 ORTHO05D004491 3.3e-08 63.9 280 22.1
Sabra14G0102500 Salix brachista HOM05D002999 ORTHO05D003137 3.3e-08 63.9 150 32.0
TAR376G0761 Trochodendron aralioides HOM05D003825 ORTHO05D004491 3.3e-08 63.9 274 22.3
Haze_27091 Corylus avellana HOM05D002999 ORTHO05D003137 5.6e-08 63.2 268 24.3
Zm00001eb354420 Zea mays HOM05D002999 ORTHO05D003137 5.6e-08 63.2 266 23.7
Sc19g0004770 Simmondsia chinensis HOM05D002999 ORTHO05D003137 7.4e-08 62.8 360 22.2
Aqoxy6G01089 Aquilegia oxysepala HOM05D003825 ORTHO05D004491 1.6e-07 61.6 300 22.0
Aa31LG8G13600 Aethionema arabicum HOM05D003825 ORTHO05D004491 2.8e-07 60.8 298 20.5
AUR62018095 Chenopodium quinoa HOM05D002999 ORTHO05D003137 2.8e-07 60.8 342 23.1
DCAR_018378 Daucus carota HOM05D002999 ORTHO05D003137 2.8e-07 60.8 346 21.7
A03p62930 Brassica napus HOM05D003825 ORTHO05D004491 3.7e-07 60.5 291 21.6
C07p60600 Brassica napus HOM05D003825 ORTHO05D004491 4.8e-07 60.1 292 21.6
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 4.8e-07 60.1 292 21.6
BraA03t15368Z Brassica rapa HOM05D003825 ORTHO05D004491 4.8e-07 60.1 292 22.6
Os03g0669200 Oryza sativa ssp. japonica HOM05D003825 ORTHO05D004491 4.8e-07 60.1 275 20.4
Lsat_1_v5_gn_7_89161 Lactuca sativa HOM05D003825 ORTHO05D004491 6.2e-07 59.7 300 21.7
BraA08t33644Z Brassica rapa HOM05D003825 ORTHO05D004491 8.1e-07 59.3 250 22.4
AUR62011330 Chenopodium quinoa HOM05D003825 ORTHO05D004491 8.1e-07 59.3 248 22.2
AUR62016731 Chenopodium quinoa HOM05D003825 ORTHO05D004491 8.1e-07 59.3 248 22.2
Pp3c1_22090 Physcomitrium patens HOM05D002999 ORTHO05D003137 8.1e-07 59.3 254 24.0
SalBow2G2809 Salvia bowleyana HOM05D002999 ORTHO05D003137 1.1e-06 58.9 150 31.3
THA.LOC104801205 Tarenaya hassleriana HOM05D002999 ORTHO05D003137 1.1e-06 58.9 361 21.9
BolC1t00419H Brassica oleracea HOM05D003825 ORTHO05D004491 1.4e-06 58.5 275 21.5
DCAR_001583 Daucus carota HOM05D003825 ORTHO05D004491 1.4e-06 58.5 275 20.7
C01p04290 Brassica napus HOM05D003825 ORTHO05D004491 2.4e-06 57.8 275 21.5
ECA236G2533 Erigeron canadensis HOM05D003825 ORTHO05D004491 3.1e-06 57.4 240 24.6
AT4G34460 Arabidopsis thaliana HOM05D003825 ORTHO05D004491 4.0e-06 57.0 270 21.5
A01p03980 Brassica napus HOM05D003825 ORTHO05D004491 4.0e-06 57.0 275 21.5
BraA01t00386Z Brassica rapa HOM05D003825 ORTHO05D004491 4.0e-06 57.0 275 21.5
CARHR242280 Cardamine hirsuta HOM05D003825 ORTHO05D004491 4.0e-06 57.0 287 21.3
Sp7g32260 Schrenkiella parvula HOM05D003825 ORTHO05D004491 4.0e-06 57.0 275 21.8
C03p85750 Brassica napus HOM05D003825 ORTHO05D004491 5.3e-06 56.6 250 21.2
BolC3t20866H Brassica oleracea HOM05D003825 ORTHO05D004491 5.3e-06 56.6 250 21.2
Cpa.g.sc62.142 Carica papaya HOM05D003825 ORTHO05D004491 5.3e-06 56.6 279 23.3
Lalb_Chr03g0025731 Lupinus albus HOM05D003825 ORTHO05D004491 5.3e-06 56.6 275 23.3
TWI75G0614 Tripterygium wilfordii HOM05D003825 ORTHO05D004491 6.9e-06 56.2 300 22.7


User provided reference genes

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