Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 1.7e-106 389.4 202 100.0
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 8.5e-95 350.5 205 90.7
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.4e-89 333.2 206 87.9
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 9.5e-78 293.9 205 79.0
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 9.8e-75 283.9 196 81.6
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 8.4e-42 174.5 213 54.9
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 7.8e-40 167.9 214 53.7
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 5.6e-38 161.8 206 52.4
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 1.4e-36 157.1 209 52.2
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 2.4e-36 156.4 209 51.2
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 2.4e-36 156.4 197 52.8
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 6.9e-36 154.8 195 49.7
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 9.0e-36 154.5 205 50.7
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 2.0e-35 153.3 201 51.2
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.0e-35 153.3 216 49.1
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 2.0e-35 153.3 198 51.5
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 5.8e-35 151.8 202 52.0
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 7.6e-35 151.4 208 49.5
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.7e-34 150.2 180 53.9
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.2e-34 149.8 209 52.6
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.8e-34 149.1 208 49.5
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.8e-34 149.1 208 49.5
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 8.4e-34 147.9 203 49.8
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.1e-33 147.5 198 50.5
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.4e-33 147.1 207 49.8
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.9e-33 146.7 204 51.0
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 3.2e-33 146.0 197 50.8
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 4.2e-33 145.6 193 51.3
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 4.2e-33 145.6 182 50.5
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 5.4e-33 145.2 198 49.0
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 7.1e-33 144.8 211 50.7
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.6e-32 143.7 211 50.7
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 1.6e-32 143.7 201 50.2
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.1e-30 137.5 188 51.1
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 1.9e-30 136.7 184 47.8
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 3.3e-30 136.0 200 47.0
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 4.3e-30 135.6 180 50.0
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.6e-29 133.7 201 50.2
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 3.6e-29 132.5 207 46.9
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.8e-28 130.2 188 47.9
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 6.9e-28 128.3 205 44.4
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 6.9e-28 128.3 195 46.2
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 9.0e-28 127.9 195 47.2
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.2e-27 127.5 187 46.5
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 1.5e-27 127.1 201 47.3
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.5e-27 125.6 204 44.1
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 4.5e-27 125.6 175 42.9
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 5.8e-27 125.2 186 46.8
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 9.9e-27 124.4 177 44.6
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.7e-26 123.6 184 46.2
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 2.9e-26 122.9 188 45.7
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 3.8e-26 122.5 202 45.5
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.4e-26 121.7 196 42.3
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 6.4e-26 121.7 196 42.3
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 6.4e-26 121.7 201 45.8
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.1e-25 120.9 178 44.4
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.9e-25 120.2 181 45.9
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 3.2e-25 119.4 213 43.7
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 4.2e-25 119.0 198 40.9
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 9.3e-25 117.9 202 41.6
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 3.5e-24 115.9 199 41.7
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.0e-23 114.4 181 42.5
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.0e-23 114.4 213 45.1
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 1.3e-23 114.0 170 48.2
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 8.7e-23 111.3 169 46.7
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 1.1e-22 110.9 213 41.8
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.5e-22 110.5 148 48.6
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.5e-22 109.8 196 41.3
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.3e-22 109.4 183 42.1
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 3.3e-22 109.4 183 42.1
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 3.3e-22 109.4 201 39.3
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 7.4e-22 108.2 170 46.5
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.3e-21 107.5 183 43.2
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.6e-21 107.1 198 41.9
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 2.1e-21 106.7 163 46.6
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 3.7e-21 105.9 204 42.2
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 4.8e-21 105.5 214 39.3
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 4.8e-21 105.5 201 42.8
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.1e-20 104.4 131 48.9
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 1.4e-20 104.0 189 40.7
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 2.4e-20 103.2 203 39.4
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 4.0e-20 102.4 190 42.1
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 5.3e-20 102.1 197 38.6
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.9e-20 101.7 178 37.1
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 6.9e-20 101.7 197 39.1
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.5e-19 100.5 199 37.2
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 2.0e-19 100.1 166 41.6
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.0e-18 97.8 200 40.5
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.3e-18 97.4 205 39.0
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 2.9e-18 96.3 175 46.3
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 6.5e-18 95.1 184 38.0
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 8.4e-18 94.7 179 38.5
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 5.5e-17 92.0 187 41.7
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 1.2e-16 90.9 195 39.5
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.2e-16 90.9 197 37.1
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.6e-16 90.5 176 38.6
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.6e-16 90.5 176 38.6
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.7e-16 89.7 172 40.7
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 3.5e-16 89.4 182 35.7
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 3.5e-16 89.4 177 37.9
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 6.0e-16 88.6 176 40.3
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 7.9e-16 88.2 187 41.2
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 7.9e-16 88.2 176 38.6
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 1.3e-15 87.4 213 36.2
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 1.8e-15 87.0 176 38.6
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 1.1e-14 84.3 201 35.3
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.1e-14 84.3 182 37.4
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 1.5e-14 84.0 176 37.5
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.9e-14 83.6 176 36.9
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.3e-14 82.4 201 34.3
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 4.3e-14 82.4 195 39.0
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 4.3e-14 82.4 137 44.5
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 4.3e-14 82.4 183 35.5
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 4.3e-14 82.4 183 37.7
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 5.7e-14 82.0 167 34.1
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.4e-14 81.6 164 39.0
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 9.6e-14 81.3 198 35.9
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 9.6e-14 81.3 163 38.0
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 9.6e-14 81.3 208 34.1
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 4.8e-13 79.0 196 36.2
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 4.8e-13 79.0 196 36.2
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 6.2e-13 78.6 191 36.6
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 6.2e-13 78.6 163 37.4
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 8.2e-13 78.2 175 36.0
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.1e-12 77.8 182 35.7
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 1.4e-12 77.4 175 37.1
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 1.4e-12 77.4 193 34.7
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.8e-12 77.0 177 33.3
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 2.4e-12 76.6 164 39.0
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.5e-11 73.9 177 32.8
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 2.6e-11 73.2 214 33.6
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 3.4e-11 72.8 170 34.1
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 3.4e-11 72.8 166 38.6
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 5.8e-11 72.0 181 36.5
ClCG01G022190 Citrullus lanatus HOM05D004361 ORTHO05D004706 1.3e-10 70.9 197 35.0
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 1.7e-10 70.5 192 34.4
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 5.0e-10 68.9 192 33.9
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 8.4e-10 68.2 185 33.0
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.5e-09 66.6 93 50.5
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 7.1e-09 65.1 172 32.6
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 2.1e-08 63.5 112 42.9
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 2.1e-08 63.5 170 31.2
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 2.1e-08 63.5 178 34.3
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 2.7e-08 63.2 188 34.0
Sed0009826 Sechium edule HOM05D004361 ORTHO05D004706 2.7e-08 63.2 155 34.8
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 3.5e-08 62.8 167 35.9
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 4.6e-08 62.4 182 33.5
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 3.9e-07 59.3 174 34.5
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 8.7e-07 58.2 163 35.0


User provided reference genes

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