Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.5e-56 222.6 115 100.0
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 2.1e-42 175.6 111 79.3
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 2.4e-41 172.2 110 80.0
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 6.9e-41 170.6 115 78.3
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 4.5e-24 114.8 109 54.1
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 4.5e-24 114.8 110 52.7
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 7.6e-24 114.0 112 58.0
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.7e-23 112.8 109 53.2
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 2.2e-23 112.5 112 49.1
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 3.8e-23 111.7 106 50.9
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 8.4e-23 110.5 111 48.6
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.2e-22 107.5 106 48.1
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 3.5e-21 105.1 116 47.4
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 6.1e-21 104.4 112 51.8
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.0e-20 103.6 108 51.9
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.8e-20 102.8 112 46.4
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 3.0e-20 102.1 113 48.7
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 6.7e-20 100.9 111 50.5
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 8.7e-20 100.5 111 47.7
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.9e-19 99.4 114 47.4
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.5e-19 99.0 111 46.8
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 3.3e-19 98.6 111 47.7
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 5.7e-19 97.8 114 46.5
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 5.7e-19 97.8 113 47.8
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 7.4e-19 97.4 116 51.7
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.7e-19 97.1 111 43.2
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.3e-18 96.7 111 43.2
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.3e-18 96.7 111 43.2
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.3e-18 96.7 115 47.0
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 1.6e-18 96.3 115 47.0
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 2.2e-18 95.9 111 45.0
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 2.2e-18 95.9 113 46.9
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.7e-18 95.1 114 45.6
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 6.3e-18 94.4 116 47.4
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 8.2e-18 94.0 113 45.1
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 1.1e-17 93.6 110 47.3
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.8e-17 92.8 111 43.2
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 2.4e-17 92.4 110 46.4
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 2.4e-17 92.4 110 45.5
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.4e-17 92.4 112 42.9
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 2.4e-17 92.4 113 48.7
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 4.1e-17 91.7 114 43.0
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 6.9e-17 90.9 106 44.3
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.0e-16 89.4 116 43.1
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 4.5e-16 88.2 116 43.1
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 1.3e-15 86.7 121 39.7
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.9e-15 85.5 116 42.2
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.9e-15 85.5 105 42.9
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 2.9e-15 85.5 111 43.2
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 6.5e-15 84.3 105 42.9
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 8.5e-15 84.0 111 42.3
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 8.5e-15 84.0 113 44.2
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.4e-14 83.2 113 48.7
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 3.2e-14 82.0 103 42.7
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 4.2e-14 81.6 103 42.7
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 4.2e-14 81.6 108 46.3
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 7.2e-14 80.9 120 40.0
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 9.4e-14 80.5 106 47.2
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.2e-13 80.1 119 42.0
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 3.6e-13 78.6 113 41.6
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 4.6e-13 78.2 107 44.9
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 7.9e-13 77.4 126 41.3
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 1.8e-12 76.3 106 41.5
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.8e-12 76.3 106 42.5
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.8e-12 76.3 109 43.1
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 5.1e-12 74.7 104 39.4
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 5.1e-12 74.7 111 43.2
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 8.8e-12 73.9 111 39.6
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 8.8e-12 73.9 111 43.2
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 8.8e-12 73.9 112 42.9
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 1.5e-11 73.2 105 39.0
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 2.0e-11 72.8 110 42.7
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 5.7e-11 71.2 113 40.7
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 5.7e-11 71.2 114 43.0
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 7.4e-11 70.9 113 40.7
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 9.7e-11 70.5 111 38.7
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.7e-10 69.7 103 43.7
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 2.2e-10 69.3 93 43.0
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.8e-10 68.9 107 42.1
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.8e-10 68.9 107 42.1
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 4.8e-10 68.2 107 42.1
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 6.3e-10 67.8 112 42.0
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 6.3e-10 67.8 110 39.1
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 8.2e-10 67.4 110 36.4
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 1.1e-09 67.0 111 40.5
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.8e-09 66.2 109 38.5
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.8e-09 66.2 112 41.1
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.4e-09 65.9 111 35.1
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 2.4e-09 65.9 96 44.8
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 2.4e-09 65.9 108 42.6
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 3.1e-09 65.5 121 37.2
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 3.1e-09 65.5 105 41.9
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.1e-09 65.5 104 39.4
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 5.3e-09 64.7 112 41.1
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 5.3e-09 64.7 126 37.3
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 5.3e-09 64.7 109 41.3
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 6.9e-09 64.3 113 40.7
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.5e-08 63.2 112 40.2
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.5e-08 63.2 104 33.7
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 2.0e-08 62.8 124 38.7
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 2.0e-08 62.8 109 36.7
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 2.6e-08 62.4 109 35.8
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 2.6e-08 62.4 107 40.2
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 3.4e-08 62.0 110 37.3
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 3.4e-08 62.0 112 36.6
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 3.4e-08 62.0 103 40.8
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 4.5e-08 61.6 113 37.2
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 4.5e-08 61.6 109 40.4
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 4.5e-08 61.6 109 40.4
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 4.5e-08 61.6 104 40.4
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 4.5e-08 61.6 130 35.4
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 5.9e-08 61.2 112 38.4
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.2e-07 59.3 88 47.7
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 2.2e-07 59.3 113 38.9
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.2e-07 59.3 108 38.9
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 2.9e-07 58.9 94 44.7
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 3.8e-07 58.5 116 34.5
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 6.5e-07 57.8 72 45.8
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 6.5e-07 57.8 90 43.3
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 6.5e-07 57.8 109 36.7
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 8.5e-07 57.4 108 37.0
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 8.5e-07 57.4 111 37.8
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 8.5e-07 57.4 111 37.8
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 1.1e-06 57.0 98 37.8
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.4e-06 56.6 128 32.0
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 1.4e-06 56.6 113 35.4
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.5e-06 55.8 113 36.3
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.5e-06 55.8 113 36.3
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 4.2e-06 55.1 118 33.9
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 4.2e-06 55.1 118 33.9
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 4.2e-06 55.1 118 33.9


User provided reference genes

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