Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 2491.8 1371 100.0
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 2220.3 1366 89.5
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 2011.9 1348 81.8
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 0.0e+00 1956.0 1451 77.3
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1372.8 1433 54.2
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1340.1 1397 57.3
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1327.8 1536 53.3
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1298.5 1504 49.7
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1284.2 1465 51.3
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1272.3 1512 50.7
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1270.0 1440 55.6
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1265.8 1476 54.7
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1264.6 1431 52.5
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1256.9 1449 53.3
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1255.7 1522 52.3
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1247.3 1443 55.9
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1246.1 1381 55.0
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1245.0 1551 49.8
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1241.1 1496 51.5
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1238.4 1367 56.0
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1238.0 1403 50.6
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1236.1 1397 56.5
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1216.8 1545 48.0
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1211.4 1381 50.5
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1203.3 1370 51.9
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1203.0 1405 53.4
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1196.4 1509 51.0
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1186.8 1394 53.5
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1181.0 1507 48.2
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1175.2 1390 51.7
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1168.7 1565 48.9
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1166.0 1386 53.3
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1165.6 1403 49.5
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1165.6 1385 50.6
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1164.1 1402 49.4
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1162.9 1404 53.8
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1159.4 1402 51.5
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1153.3 1536 47.3
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1152.5 1502 50.0
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1151.3 1493 50.3
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1146.3 1453 50.4
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1142.9 1410 51.0
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1140.6 1446 50.3
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1139.0 1408 49.7
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1134.8 1396 50.6
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1126.3 1374 52.2
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1120.1 1559 47.6
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1118.6 1365 52.7
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1110.1 1593 47.2
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1107.0 1383 50.5
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1104.0 1388 51.9
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1103.6 1396 48.9
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1103.6 1437 49.7
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1100.9 1399 50.1
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 1100.1 1407 47.6
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1097.8 1790 43.6
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1097.8 1438 49.5
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1092.8 1475 48.1
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1089.7 1422 48.0
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1085.5 1373 51.7
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1083.2 1417 49.0
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1080.9 1405 49.7
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 9.4e-312 1074.7 1536 46.5
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 2.7e-309 1065.8 1490 46.2
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 7.8e-309 1064.3 1526 46.9
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 1.0e-308 1063.9 1423 49.1
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 9.6e-307 1057.4 1410 46.7
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 3.6e-306 1055.4 1425 45.1
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 9.0e-305 1050.8 1556 46.5
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 7.6e-304 1047.7 1387 50.0
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 6.4e-303 1044.6 1383 48.8
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 4.3e-299 1031.9 1400 46.1
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 4.5e-296 1021.9 1395 50.3
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 7.6e-296 1021.1 1467 47.0
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 6.4e-295 1018.1 1498 46.0
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 8.2e-290 1001.1 1376 47.9
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 3.8e-287 992.3 1492 47.8
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 2.5e-286 989.6 1378 47.8
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 7.4e-283 978.0 993 55.2
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 2.2e-282 976.5 1429 46.5
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 3.4e-280 969.1 1384 46.8
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 9.7e-275 951.0 756 65.6
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 1.6e-269 933.7 1372 42.7
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 7.0e-265 918.3 1032 51.3
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 4.4e-259 899.0 1384 44.4
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 5.7e-259 898.7 1222 48.3
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 1.8e-257 893.6 1428 45.2
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 2.2e-250 870.2 999 49.2
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 3.0e-236 823.2 1390 44.2
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 5.9e-232 808.9 1299 42.3
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 9.5e-222 775.0 1305 41.8
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 3.9e-215 753.1 2352 31.3
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 2.4e-209 733.8 1159 40.8
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 4.0e-204 716.5 1371 36.3
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 7.1e-201 705.7 797 51.2
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 1.3e-178 631.7 545 61.1
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 3.2e-177 627.1 1352 36.5
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 2.6e-171 607.4 713 47.1
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 4.8e-165 586.6 1515 30.9
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 6.9e-164 582.8 907 45.5
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.5e-158 564.3 1198 39.3
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.4e-148 531.9 837 39.7
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 6.1e-136 490.0 1374 30.4
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 3.2e-129 467.6 422 60.7
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 9.8e-118 429.5 443 64.1
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 3.5e-115 421.0 553 44.3
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 2.4e-108 398.3 1459 26.9
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.3e-106 391.7 501 43.7
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 2.5e-105 388.3 1552 25.5
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 2.6e-102 378.3 310 70.6
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 2.7e-99 368.2 907 30.7
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 8.6e-98 363.2 445 52.1
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 4.6e-91 340.9 304 66.1
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.2e-84 317.8 290 52.8
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 3.0e-82 311.6 1413 26.0
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 4.6e-75 287.7 277 55.6
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.6e-64 252.7 235 60.9
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 6.2e-64 250.8 224 63.4
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.4e-54 218.4 155 73.5
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.5e-51 208.4 796 26.8
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.3e-47 194.5 271 44.6
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 7.9e-43 180.6 230 52.2
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 3.0e-42 178.7 152 65.1
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-41 174.1 685 25.4
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 7.4e-41 174.1 236 41.1
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 2.4e-39 169.1 127 70.9
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 1.4e-36 159.8 154 59.1
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 8.5e-29 134.0 201 41.8
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 2.1e-27 129.4 334 28.1
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 8.2e-24 117.5 99 61.6
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 1.2e-22 113.6 220 37.7
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.2e-22 113.6 693 23.5
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 4.5e-22 111.7 100 60.0
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 3.8e-21 108.6 413 24.7
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 9.4e-20 104.0 74 66.2
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.2e-16 92.8 66 71.2
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 1.4e-15 90.1 241 29.9
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.5e-12 80.1 78 56.4
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.4e-10 73.6 71 57.7
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 9.8e-09 67.4 50 64.0
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 1.7e-08 66.6 147 34.0
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 6.3e-08 64.7 175 31.4
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 9.2e-07 60.8 213 25.8
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 1.2e-06 60.5 70 51.4


User provided reference genes

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