Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.2e-82 308.9 159 100.0
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.8e-40 169.1 104 83.7
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 8.9e-39 164.1 104 79.8
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 2.0e-38 162.9 106 82.1
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 2.2e-37 159.5 103 77.7
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 5.8e-22 108.2 103 59.2
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 1.3e-21 107.1 90 62.2
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 3.8e-21 105.5 103 57.3
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 6.4e-21 104.8 103 56.3
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.1e-20 104.0 94 60.6
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 2.4e-20 102.8 103 55.3
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 4.2e-20 102.1 106 52.8
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 3.5e-19 99.0 90 57.8
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 3.5e-19 99.0 90 57.8
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 6.0e-19 98.2 105 50.5
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 1.3e-18 97.1 105 55.2
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 1.9e-17 93.2 105 53.3
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.5e-17 92.8 105 49.5
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 4.3e-17 92.0 102 52.0
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 5.6e-17 91.7 106 49.1
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 5.6e-17 91.7 108 49.1
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.3e-17 91.3 110 47.3
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 7.3e-17 91.3 110 47.3
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.6e-16 90.1 94 48.9
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.6e-16 90.1 92 54.3
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 2.8e-16 89.4 104 47.1
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.6e-16 89.0 111 47.7
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.6e-16 89.0 111 47.7
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.8e-16 88.6 92 52.2
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.2e-16 88.2 110 46.4
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 8.1e-16 87.8 92 52.2
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.1e-15 87.4 87 55.2
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.1e-15 87.4 106 46.2
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.8e-15 86.7 106 46.2
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 4.0e-15 85.5 101 48.5
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 4.0e-15 85.5 101 48.5
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 4.0e-15 85.5 108 47.2
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 4.0e-15 85.5 81 54.3
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 5.3e-15 85.1 101 49.5
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 6.9e-15 84.7 95 52.6
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 9.0e-15 84.3 106 44.3
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 9.0e-15 84.3 94 46.8
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 2.0e-14 83.2 89 49.4
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 2.0e-14 83.2 105 45.7
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 2.6e-14 82.8 95 49.5
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 3.4e-14 82.4 89 48.3
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.4e-14 82.4 80 53.8
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.4e-14 82.0 92 51.1
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.4e-14 82.0 92 51.1
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 4.4e-14 82.0 109 45.9
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 7.6e-14 81.3 87 51.7
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.6e-14 81.3 92 51.1
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.6e-14 81.3 103 42.7
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 9.9e-14 80.9 75 54.7
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 9.9e-14 80.9 95 49.5
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 9.9e-14 80.9 97 44.3
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 2.9e-13 79.3 92 51.1
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 3.8e-13 79.0 85 58.8
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.8e-13 79.0 111 39.6
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 4.9e-13 78.6 94 50.0
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 4.9e-13 78.6 101 46.5
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.9e-13 78.6 80 53.8
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.9e-13 78.6 106 43.4
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 6.4e-13 78.2 101 46.5
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 8.4e-13 77.8 90 50.0
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 1.1e-12 77.4 81 51.9
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.1e-12 77.4 91 47.3
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.1e-12 77.4 75 53.3
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.4e-12 77.0 81 50.6
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.4e-12 77.0 81 50.6
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 3.2e-12 75.9 93 50.5
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 5.4e-12 75.1 80 52.5
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 1.2e-11 73.9 101 46.5
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.2e-11 73.9 91 45.1
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 1.2e-11 73.9 103 41.7
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.2e-11 73.9 80 50.0
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 1.2e-11 73.9 81 44.4
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 1.6e-11 73.6 94 41.5
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.1e-11 73.2 103 40.8
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 3.5e-11 72.4 87 46.0
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.5e-11 72.4 93 45.2
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 4.6e-11 72.0 107 43.0
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 6.0e-11 71.6 87 46.0
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 6.0e-11 71.6 87 44.8
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 6.0e-11 71.6 87 44.8
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 7.9e-11 71.2 65 56.9
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 7.9e-11 71.2 109 41.3
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.3e-10 70.5 70 54.3
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.3e-10 70.5 93 40.9
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 1.3e-10 70.5 93 46.2
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.7e-10 70.1 65 56.9
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.7e-10 70.1 90 41.1
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.3e-10 69.7 72 51.4
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 5.1e-10 68.6 64 56.2
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 6.6e-10 68.2 103 44.7
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.6e-10 68.2 65 55.4
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.5e-09 67.0 72 50.0
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.5e-09 67.0 100 38.0
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 1.9e-09 66.6 93 47.3
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 2.5e-09 66.2 97 43.3
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 7.3e-09 64.7 93 43.0
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 1.3e-08 63.9 83 41.0
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 1.3e-08 63.9 96 40.6
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 1.6e-08 63.5 101 38.6
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 3.6e-08 62.4 102 38.2
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.6e-08 62.4 69 43.5
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 8.1e-08 61.2 102 40.2
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 8.1e-08 61.2 64 50.0
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 1.1e-07 60.8 101 38.6
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.4e-07 60.5 101 37.6
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 1.4e-07 60.5 60 58.3
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 1.4e-07 60.5 60 58.3
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.4e-07 60.5 77 36.4
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.8e-07 60.1 102 37.3
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 1.8e-07 60.1 102 37.3
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.8e-07 60.1 102 37.3
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 2.4e-07 59.7 97 34.0
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 4.0e-07 58.9 63 52.4
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 4.0e-07 58.9 102 36.3
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 5.3e-07 58.5 90 43.3
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 6.9e-07 58.2 102 37.3
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 9.0e-07 57.8 74 35.1
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 2.0e-06 56.6 67 47.8
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 2.6e-06 56.2 67 50.7
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 2.6e-06 56.2 102 36.3
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 2.6e-06 56.2 110 35.5
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 2.6e-06 56.2 85 38.8
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 3.4e-06 55.8 102 38.2
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 4.5e-06 55.5 101 35.6
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 4.5e-06 55.5 101 35.6
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 4.5e-06 55.5 101 35.6
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 7.6e-06 54.7 68 48.5
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 7.6e-06 54.7 53 52.8
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 9.9e-06 54.3 103 35.9
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 9.9e-06 54.3 98 35.7
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 9.9e-06 54.3 103 35.9
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 9.9e-06 54.3 102 38.2


User provided reference genes

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