Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G004750 Citrullus lanatus HOM05D007941 ORTHO05D010050 0.0e+00 1320.8 662 100.0
CsaV3_1G010790 Cucumis sativus L. HOM05D007941 ORTHO05D010050 0.0e+00 1120.9 678 85.0
MELO3C002458.2 Cucumis melo HOM05D007941 ORTHO05D010050 2.0e-310 1068.5 686 81.3
Sed0010816 Sechium edule HOM05D007941 ORTHO05D010050 2.6e-278 961.8 692 74.9
Haze_06797 Corylus avellana HOM05D007941 ORTHO05D010050 1.4e-173 614.0 716 51.4
Cfa000224 Carpinus fangiana HOM05D007941 ORTHO05D010050 6.7e-173 611.7 716 51.1
QL05p073215 Quercus lobata HOM05D007941 ORTHO05D010050 4.5e-169 599.0 720 50.6
Prupe.4G021200 Prunus persica HOM05D007941 ORTHO05D010050 1.7e-163 580.5 716 50.0
Thecc.06G220000 Theobroma cacao HOM05D007941 ORTHO05D010050 6.5e-160 568.5 714 47.9
Gorai.011G014100 Gossypium raimondii HOM05D007941 ORTHO05D010050 3.4e-156 556.2 685 48.6
VMungo1215G2837 Vigna mungo HOM05D007941 ORTHO05D010050 6.3e-155 552.0 690 48.6
Gohir.D10G012450 Gossypium hirsutum HOM05D007941 ORTHO05D010050 2.4e-154 550.1 684 48.1
TWI38G0160 Tripterygium wilfordii HOM05D007941 ORTHO05D010050 2.4e-154 550.1 718 46.7
MD05G1345700 Malus domestica HOM05D007941 ORTHO05D010050 4.1e-154 549.3 705 48.7
COL.COLO4_31770 Corchorus olitorius HOM05D007941 ORTHO05D010050 3.5e-153 546.2 694 48.6
Phvul.003G078500 Phaseolus vulgaris HOM05D007941 ORTHO05D010050 5.0e-152 542.3 692 47.8
Ciclev10017854m.g Citrus clementina HOM05D007941 ORTHO05D010050 2.5e-151 540.0 707 46.8
MD10G1321100 Malus domestica HOM05D007941 ORTHO05D010050 2.5e-151 540.0 707 49.1
Manes.16G007400 Manihot esculenta HOM05D007941 ORTHO05D010050 3.2e-151 539.7 706 47.6
Atru.chr10.2217 Acer truncatum HOM05D007941 ORTHO05D010050 7.2e-151 538.5 713 46.8
TAR627G0026 Trochodendron aralioides HOM05D007941 ORTHO05D010050 3.6e-150 536.2 745 46.2
RcHm_v2.0_Chr5g0003191 Rosa chinensis HOM05D007941 ORTHO05D010050 6.1e-150 535.4 694 49.1
FAN25G1443 Fragaria x ananassa HOM05D007941 ORTHO05D010050 1.2e-148 531.2 709 47.4
Potri.004G015401 Populus trichocarpa HOM05D007941 ORTHO05D010050 1.5e-148 530.8 717 47.1
Sabra04G0007600 Salix brachista HOM05D007941 ORTHO05D010050 3.4e-148 529.6 723 46.7
FvH4_3g02100 Fragaria vesca HOM05D007941 ORTHO05D010050 7.5e-148 528.5 694 47.7
Glyma.17G013700 Glycine max HOM05D007941 ORTHO05D010050 1.3e-147 527.7 694 47.6
Nn1g07127 Nelumbo nucifera HOM05D007941 ORTHO05D010050 1.3e-147 527.7 688 47.8
Gohir.A10G012680 Gossypium hirsutum HOM05D007941 ORTHO05D010050 2.2e-147 526.9 688 47.5
Lj4g0020812 Lotus japonicus HOM05D007941 ORTHO05D010050 1.8e-146 523.9 705 47.8
CiPaw.09G091700 Carya illinoinensis HOM05D007941 ORTHO05D010050 7.2e-143 511.9 644 49.1
CANSAT56G1781 Cannabis sativa HOM05D007941 ORTHO05D010050 9.5e-143 511.5 716 47.2
Cpa.g.sc152.13 Carica papaya HOM05D007941 ORTHO05D010050 7.8e-137 491.9 706 45.5
Actinidia26916 Actinidia chinensis HOM05D007941 ORTHO05D010050 2.8e-134 483.4 650 46.8
PSO832G2769 Papaver somniferum HOM05D007941 ORTHO05D010050 1.8e-133 480.7 679 45.1
Lj1C1230T3 Lonicera japonica HOM05D007941 ORTHO05D010050 2.3e-133 480.3 579 50.1
arahy.Tifrunner.gnm1.ann1.N60BY5 Arachis hypogaea HOM05D007941 ORTHO05D010050 8.9e-133 478.4 680 45.9
arahy.Tifrunner.gnm1.ann1.CCWF18 Arachis hypogaea HOM05D007941 ORTHO05D010050 4.9e-131 472.6 679 45.2
Cc09_g01710 Coffea canephora HOM05D007941 ORTHO05D010050 1.9e-130 470.7 709 44.1
Ca_21085_v3 Cicer arietinum L. HOM05D007941 ORTHO05D010050 3.1e-125 453.4 705 44.7
Solyc03g031660.1 Solanum lycopersicum HOM05D007941 ORTHO05D010050 4.0e-125 453.0 687 43.7
Sopen03g005520 Solanum pennellii HOM05D007941 ORTHO05D010050 2.6e-124 450.3 690 43.5
TPR.G37125 Trifolium pratense HOM05D007941 ORTHO05D010050 4.6e-121 439.5 801 39.8
PGR004G0641 Punica granatum HOM05D007941 ORTHO05D010050 1.1e-117 428.3 709 41.5
Nitab4.5_0012670g0020 Nicotiana tabacum HOM05D007941 ORTHO05D010050 1.2e-116 424.9 656 41.9
CiPaw.09G091500 Carya illinoinensis HOM05D007941 ORTHO05D010050 8.6e-112 408.7 418 54.5
GSVIVG01012729001 Vitis vinifera HOM05D007941 ORTHO05D010050 4.4e-108 396.4 410 53.7
Dinv13890 Davidia involucrata HOM05D007941 ORTHO05D010050 1.3e-107 394.8 662 42.7
Peaxi162Scf00502g00214 Petunia axillaris HOM05D007941 ORTHO05D010050 1.6e-105 387.9 695 39.7
AUR62012706 Chenopodium quinoa HOM05D007941 ORTHO05D010050 9.6e-103 378.6 590 42.9
Nn1g03523 Nelumbo nucifera HOM05D007941 ORTHO05D010050 3.1e-101 373.6 373 55.8
Medtr4g132080 Medicago truncatula HOM05D007941 ORTHO05D010050 7.1e-98 362.5 460 48.9
Nitab4.5_0007864g0050 Nicotiana tabacum HOM05D007941 ORTHO05D010050 1.6e-97 361.3 677 38.1
EL10Ac8g20054 Beta vulgaris HOM05D007941 ORTHO05D010050 2.1e-97 360.9 651 38.4
Hma1.2p1_0749F.1_g212520 Hydrangea macrophylla HOM05D007941 ORTHO05D010050 7.8e-97 359.0 197 84.3
Hma1.2p1_0749F.1_g212543 Hydrangea macrophylla HOM05D007941 ORTHO05D010050 7.8e-97 359.0 197 84.3
FAN21G2241 Fragaria x ananassa HOM05D007941 ORTHO05D010050 1.9e-90 337.8 355 55.8
CDE05G3547 Ceratophyllum demersum HOM05D007941 ORTHO05D010050 9.3e-90 335.5 444 45.5
Mapoly0124s0009 Marchantia polymorpha HOM05D007941 ORTHO05D010050 3.1e-85 320.5 685 37.4
Pp3c25_7620 Physcomitrium patens HOM05D007941 ORTHO05D010050 1.3e-78 298.5 655 34.8
MBI02_g07163_MAGBIO Magnolia biondii HOM05D007941 ORTHO05D010050 7.2e-42 176.4 290 43.4
Glyma.07G260250 Glycine max HOM05D007941 ORTHO05D010050 9.1e-37 159.5 366 34.7
AUR62021949 Chenopodium quinoa HOM05D007941 ORTHO05D010050 4.0e-32 144.1 313 36.1
SEGI_17062 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 2.7e-28 131.3 70 81.4
ATR0794G083 Amborella trichopoda HOM05D007941 ORTHO05D010050 8.6e-27 126.3 268 36.2
Dinv20049 Davidia involucrata HOM05D007941 ORTHO05D010050 1.9e-26 125.2 201 42.3
SEGI_08485 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 4.3e-26 124.0 298 35.6
SEGI_18097 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 7.2e-26 123.2 301 33.9
FAN21G0178 Fragaria x ananassa HOM05D007941 ORTHO05D010050 1.6e-20 105.5 178 41.0
AUR62021948 Chenopodium quinoa HOM05D007941 ORTHO05D010050 2.7e-20 104.8 264 34.8
Dinv20048 Davidia involucrata HOM05D007941 ORTHO05D010050 6.6e-19 100.1 258 34.5
PSO210G6634 Papaver somniferum HOM05D007941 ORTHO05D010050 1.2e-07 62.8 141 32.6
Medtr4g132090 Medicago truncatula HOM05D007941 ORTHO05D010050 2.0e-07 62.0 166 33.1
ATR0794G095 Amborella trichopoda HOM05D007941 ORTHO05D010050 2.6e-07 61.6 204 30.4


User provided reference genes

Program Settings