Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 4.2e-96 354.8 186 100.0
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 1.9e-80 302.8 176 91.5
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 1.3e-78 296.6 176 88.6
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 9.6e-77 290.4 176 86.4
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 2.0e-61 239.6 181 74.0
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 3.3e-61 238.8 169 73.4
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 7.4e-61 237.7 178 72.5
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 9.7e-61 237.3 179 74.9
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 2.2e-60 236.1 173 72.8
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 2.8e-60 235.7 179 74.3
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 4.8e-60 235.0 179 74.3
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 1.8e-59 233.0 177 71.8
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 5.3e-59 231.5 173 71.7
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 9.1e-59 230.7 164 76.2
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 1.2e-58 230.3 174 71.8
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 1.5e-58 229.9 173 72.3
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 1.5e-58 229.9 173 72.3
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 3.4e-58 228.8 166 72.9
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 4.5e-58 228.4 178 72.5
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 4.5e-58 228.4 178 72.5
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 5.9e-58 228.0 168 75.0
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 2.9e-57 225.7 174 71.3
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 5.0e-57 224.9 182 68.1
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 5.0e-57 224.9 184 67.9
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 5.0e-57 224.9 178 68.5
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 1.1e-56 223.8 184 67.4
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 1.1e-56 223.8 178 70.2
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 3.2e-56 222.2 167 72.5
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 5.5e-56 221.5 167 72.5
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 2.1e-55 219.5 173 68.8
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 2.7e-55 219.2 178 68.0
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 2.7e-55 219.2 178 68.0
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 3.6e-55 218.8 173 71.1
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 7.9e-55 217.6 173 70.5
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 1.4e-54 216.9 170 71.8
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 2.3e-54 216.1 168 71.4
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 5.1e-54 214.9 178 69.7
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 5.1e-54 214.9 178 69.7
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 5.1e-54 214.9 176 67.0
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 5.1e-54 214.9 173 68.8
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 6.7e-54 214.5 161 73.9
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 6.7e-54 214.5 178 69.7
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 6.7e-54 214.5 178 69.7
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 6.7e-54 214.5 178 69.7
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 6.7e-54 214.5 181 67.4
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 8.8e-54 214.2 172 68.6
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 8.8e-54 214.2 149 77.9
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 1.1e-53 213.8 161 74.5
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 2.0e-53 213.0 172 68.0
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 2.0e-53 213.0 172 68.0
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 2.0e-53 213.0 172 68.0
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 2.0e-53 213.0 166 71.1
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 2.0e-53 213.0 169 69.2
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 2.6e-53 212.6 147 76.2
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 3.3e-53 212.2 162 70.4
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 4.4e-53 211.8 169 69.2
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 5.7e-53 211.5 149 75.8
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 7.4e-53 211.1 181 65.7
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 7.4e-53 211.1 176 68.8
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 1.3e-52 210.3 161 73.9
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 2.8e-52 209.1 183 66.7
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 3.7e-52 208.8 169 69.2
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 3.7e-52 208.8 170 68.2
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 3.7e-52 208.8 160 71.9
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 3.7e-52 208.8 148 76.4
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 4.8e-52 208.4 174 69.5
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 8.2e-52 207.6 168 69.6
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 1.4e-51 206.8 161 72.7
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 1.8e-51 206.5 180 65.0
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 2.4e-51 206.1 173 68.8
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 2.4e-51 206.1 180 64.4
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 3.1e-51 205.7 161 72.0
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 9.1e-51 204.1 178 63.5
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 1.5e-50 203.4 172 65.1
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 3.5e-50 202.2 147 73.5
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 2.2e-49 199.5 156 69.2
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 2.9e-49 199.1 167 66.5
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 3.8e-49 198.7 161 70.8
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 3.8e-49 198.7 166 66.3
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 5.0e-49 198.4 151 70.2
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 1.6e-47 193.4 169 63.9
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 2.7e-47 192.6 164 62.8
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 6.1e-47 191.4 164 62.8
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 1.0e-46 190.7 178 62.4
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 1.0e-46 190.7 172 64.5
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 3.9e-46 188.7 150 66.7
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 3.1e-43 179.1 128 72.7
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 4.5e-42 175.3 176 59.1
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 7.2e-40 167.9 151 60.3
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 3.0e-38 162.5 153 60.8
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 5.3e-35 151.8 118 70.3
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 7.0e-35 151.4 149 57.7
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 1.6e-34 150.2 149 58.4
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 1.3e-33 147.1 180 52.8
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 2.2e-33 146.4 109 68.8
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 5.5e-32 141.7 107 73.8
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 4.7e-23 112.1 82 75.6
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 1.8e-22 110.2 82 74.4
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 6.8e-22 108.2 87 65.5
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 2.2e-20 103.2 74 74.3
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 9.2e-19 97.8 88 60.2
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 1.6e-18 97.1 80 63.8
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 1.3e-17 94.0 118 44.1
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 2.3e-17 93.2 103 55.3
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 2.9e-12 76.3 58 74.1
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 7.8e-10 68.2 112 35.7
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 3.9e-09 65.9 48 70.8
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 6.6e-09 65.1 46 73.9
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 9.5e-08 61.2 102 36.3
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 3.6e-07 59.3 130 38.5


User provided reference genes

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