Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G003870 Citrullus lanatus HOM05D003325 ORTHO05D003852 2.1e-73 278.9 136 100.0
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 1.8e-24 116.3 112 56.2
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 1.2e-23 113.6 84 67.9
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 1.2e-23 113.6 105 56.2
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 4.5e-23 111.7 84 65.5
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 5.9e-23 111.3 83 68.7
MD06G1139500 Malus domestica HOM05D003325 ORTHO05D003852 5.9e-23 111.3 85 64.7
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 7.6e-23 110.9 84 65.5
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 1.0e-22 110.5 115 55.7
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 1.0e-22 110.5 84 64.3
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 1.3e-22 110.2 87 62.1
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 1.3e-22 110.2 84 63.1
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 1.7e-22 109.8 110 53.6
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 2.2e-22 109.4 85 63.5
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 2.2e-22 109.4 96 57.3
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 3.8e-22 108.6 84 64.3
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 5.0e-22 108.2 87 64.4
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 5.0e-22 108.2 87 64.4
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 5.0e-22 108.2 87 64.4
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 5.0e-22 108.2 96 57.3
QL03p041468 Quercus lobata HOM05D003325 ORTHO05D003852 6.5e-22 107.8 83 65.1
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 8.5e-22 107.5 106 56.6
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 1.1e-21 107.1 81 64.2
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 1.1e-21 107.1 85 61.2
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 1.4e-21 106.7 125 48.0
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 1.4e-21 106.7 85 63.5
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 1.4e-21 106.7 85 63.5
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 1.4e-21 106.7 95 60.0
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 1.9e-21 106.3 84 61.9
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 2.5e-21 105.9 79 65.8
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 3.2e-21 105.5 83 65.1
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.2e-21 105.5 83 65.1
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 3.2e-21 105.5 84 63.1
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 3.2e-21 105.5 84 63.1
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 3.2e-21 105.5 103 58.3
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 4.2e-21 105.1 95 61.1
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 4.2e-21 105.1 83 63.9
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 4.2e-21 105.1 101 54.5
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 5.5e-21 104.8 93 61.3
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 9.4e-21 104.0 83 65.1
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 9.4e-21 104.0 86 60.5
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.2e-20 103.6 81 66.7
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 1.2e-20 103.6 95 57.9
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 1.2e-20 103.6 80 67.5
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 1.2e-20 103.6 87 59.8
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 1.6e-20 103.2 93 58.1
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.6e-20 103.2 86 61.6
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 1.6e-20 103.2 106 55.7
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 1.6e-20 103.2 84 65.5
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 1.6e-20 103.2 95 57.9
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 1.6e-20 103.2 94 59.6
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 1.6e-20 103.2 95 57.9
FAN08G2527 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.1e-20 102.8 82 63.4
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 2.7e-20 102.4 84 61.9
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 2.7e-20 102.4 84 63.1
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.6e-20 102.1 86 59.3
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 3.6e-20 102.1 105 52.4
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 4.6e-20 101.7 83 61.4
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 4.6e-20 101.7 86 60.5
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 6.1e-20 101.3 81 59.3
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 6.1e-20 101.3 81 59.3
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 6.1e-20 101.3 85 61.2
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 6.1e-20 101.3 84 60.7
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 7.9e-20 100.9 80 60.0
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 1.4e-19 100.1 87 60.9
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 2.3e-19 99.4 78 64.1
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 2.3e-19 99.4 81 63.0
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 2.3e-19 99.4 113 46.9
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.0e-19 99.0 80 60.0
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 3.9e-19 98.6 86 57.0
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 3.9e-19 98.6 80 60.0
Lj5A94T49 Lonicera japonica HOM05D003325 ORTHO05D003852 3.9e-19 98.6 80 61.2
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 6.7e-19 97.8 75 65.3
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 8.8e-19 97.4 81 58.0
Migut.I00368 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.1e-18 97.1 80 61.2
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.1e-18 97.1 85 57.6
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 1.1e-18 97.1 81 58.0
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 1.5e-18 96.7 90 54.4
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 1.5e-18 96.7 106 49.1
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 1.9e-18 96.3 80 60.0
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 2.5e-18 95.9 80 56.2
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 2.5e-18 95.9 79 59.5
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 2.5e-18 95.9 87 57.5
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 4.3e-18 95.1 79 64.6
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 4.3e-18 95.1 85 56.5
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 4.3e-18 95.1 85 56.5
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 5.7e-18 94.7 80 60.0
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 7.4e-18 94.4 79 63.3
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 7.4e-18 94.4 79 63.3
QL03p041488 Quercus lobata HOM05D003325 ORTHO05D003852 7.4e-18 94.4 102 54.9
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 7.4e-18 94.4 88 53.4
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 1.7e-17 93.2 87 51.7
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 2.2e-17 92.8 78 59.0
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 2.8e-17 92.4 80 55.0
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.8e-17 92.4 81 56.8
EL10Ac5g11389 Beta vulgaris HOM05D003325 ORTHO05D003852 4.8e-17 91.7 83 56.6
HanXRQChr13g0408761 Helianthus annuus HOM05D003325 ORTHO05D003852 4.8e-17 91.7 87 55.2
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 4.8e-17 91.7 81 56.8
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 4.8e-17 91.7 84 53.6
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 6.3e-17 91.3 94 57.4
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 6.3e-17 91.3 83 57.8
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 6.3e-17 91.3 91 51.6
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 8.2e-17 90.9 79 63.3
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 8.2e-17 90.9 80 55.0
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 1.4e-16 90.1 79 59.5
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 1.4e-16 90.1 85 54.1
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 1.8e-16 89.7 101 44.6
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 4.1e-16 88.6 79 54.4
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 5.3e-16 88.2 80 56.2
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 5.3e-16 88.2 79 60.8
HanXRQChr04g0099651 Helianthus annuus HOM05D003325 ORTHO05D003852 6.9e-16 87.8 76 59.2
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 9.1e-16 87.4 80 53.8
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 9.1e-16 87.4 75 60.0
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 9.1e-16 87.4 107 44.9
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 9.1e-16 87.4 70 61.4
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 1.5e-15 86.7 77 57.1
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 2.0e-15 86.3 96 46.9
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 2.6e-15 85.9 78 51.3
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 5.9e-15 84.7 79 51.9
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 5.9e-15 84.7 103 45.6
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 5.9e-15 84.7 87 52.9
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 7.7e-15 84.3 84 52.4
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 1.0e-14 84.0 84 52.4
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 1.0e-14 84.0 79 57.0
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 1.0e-14 84.0 84 52.4
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 1.0e-14 84.0 79 57.0
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 1.3e-14 83.6 111 45.9
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.3e-14 83.6 80 55.0
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.3e-14 83.6 101 45.5
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 1.3e-14 83.6 80 55.0
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 1.7e-14 83.2 84 53.6
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 1.7e-14 83.2 101 45.5
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 2.2e-14 82.8 81 53.1
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 2.9e-14 82.4 79 57.0
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 2.9e-14 82.4 79 57.0
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 2.9e-14 82.4 77 54.5
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 3.8e-14 82.0 79 57.0
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 3.8e-14 82.0 84 51.2
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 3.8e-14 82.0 79 55.7
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 3.8e-14 82.0 84 51.2
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 3.8e-14 82.0 80 51.2
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 5.0e-14 81.6 80 51.2
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 6.5e-14 81.3 78 50.0
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 1.1e-13 80.5 76 56.6
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 1.1e-13 80.5 78 53.8
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.4e-13 80.1 122 41.0
ATR0561G235 Amborella trichopoda HOM05D003325 ORTHO05D003852 7.2e-13 77.8 117 37.6
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 1.6e-12 76.6 78 46.2
Aqoxy1G03157 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 2.1e-12 76.3 74 55.4
Aqoxy1G03342 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 2.1e-12 76.3 74 55.4
Migut.O00357 Erythranthe guttata HOM05D003325 ORTHO05D003852 2.1e-12 76.3 79 50.6
FAN13G1110 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.1e-12 76.3 59 61.0
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 2.7e-12 75.9 80 51.2
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.7e-12 75.9 80 48.8
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 2.7e-12 75.9 80 48.8
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 3.6e-12 75.5 89 42.7
Aqoxy2G00205 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 4.7e-12 75.1 74 55.4
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.4e-11 73.6 80 50.0
AL3G40400 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 2.3e-11 72.8 116 38.8
Migut.K00759 Erythranthe guttata HOM05D003325 ORTHO05D003852 6.7e-11 71.2 76 50.0
arahy.Tifrunner.gnm1.ann1.RXUH3Q Arachis hypogaea HOM05D016848 ORTHO05D014290 7.4e-10 67.8 68 50.0
MD06G1138900 Malus domestica HOM05D003325 ORTHO05D003852 9.7e-10 67.4 62 53.2
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 1.4e-08 63.5 52 59.6
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 4.1e-08 62.0 61 45.9
VMungo0251G0588 Vigna mungo HOM05D003461 ORTHO05D005835 5.9e-07 58.2 46 58.7
arahy.Tifrunner.gnm1.ann1.J3UYEB Arachis hypogaea HOM05D003325 ORTHO05D003852 1.3e-06 57.0 43 65.1


User provided reference genes

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