Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G003560 Citrullus lanatus HOM05D007996 ORTHO05D009821 6.9e-31 136.7 72 100.0
Sed0008862 Sechium edule HOM05D007996 ORTHO05D009821 2.8e-24 114.8 70 84.3
CsaV3_1G009400 Cucumis sativus L. HOM05D007996 ORTHO05D009821 4.5e-22 107.5 70 85.7
Sed0027846 Sechium edule HOM05D007996 ORTHO05D009821 1.0e-21 106.3 71 83.1
MELO3C002341.2 Cucumis melo HOM05D007996 ORTHO05D009821 6.5e-21 103.6 73 79.5
CiPaw.12G036300 Carya illinoinensis HOM05D007996 ORTHO05D009821 5.0e-13 77.4 68 63.2
QL10p004811 Quercus lobata HOM05D007996 ORTHO05D009821 7.2e-12 73.6 67 62.7
Atru.chr9.1020 Acer truncatum HOM05D007996 ORTHO05D009821 3.6e-11 71.2 68 60.3
Medtr4g103970 Medicago truncatula HOM05D007996 ORTHO05D009821 3.6e-11 71.2 66 59.1
Thecc.03G124100 Theobroma cacao HOM05D007996 ORTHO05D009821 4.6e-11 70.9 73 56.2
Actinidia25607 Actinidia chinensis HOM05D007996 ORTHO05D009821 2.3e-10 68.6 68 58.8
Glyma.05G045400 Glycine max HOM05D007996 ORTHO05D009821 2.3e-10 68.6 70 57.1
Gohir.A12G188200 Gossypium hirsutum HOM05D007996 ORTHO05D009821 3.0e-10 68.2 75 56.0
Gohir.D12G191000 Gossypium hirsutum HOM05D007996 ORTHO05D009821 3.0e-10 68.2 75 56.0
Gorai.008G204900 Gossypium raimondii HOM05D007996 ORTHO05D009821 3.0e-10 68.2 75 56.0
Lj4g0006448 Lotus japonicus HOM05D007996 ORTHO05D009821 3.9e-10 67.8 66 57.6
TWI14G0037 Tripterygium wilfordii HOM05D007996 ORTHO05D009821 3.9e-10 67.8 66 57.6
Psat4g063440 Pisum sativum HOM05D007996 ORTHO05D009821 5.1e-10 67.4 66 56.1
AUR62001291 Chenopodium quinoa HOM05D007996 ORTHO05D009821 6.7e-10 67.0 67 56.7
CiPaw.11G011200 Carya illinoinensis HOM05D007996 ORTHO05D009821 8.8e-10 66.6 68 57.4
TPR.G40415 Trifolium pratense HOM05D007996 ORTHO05D009821 1.5e-09 65.9 66 54.5
Glyma.17G127600 Glycine max HOM05D007996 ORTHO05D009821 2.0e-09 65.5 70 55.7
Phvul.003G208700 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 2.0e-09 65.5 70 55.7
Duzib084G1431 Durio zibethinus HOM05D007996 ORTHO05D009821 3.3e-09 64.7 72 54.2
Manes.14G054700 Manihot esculenta HOM05D007996 ORTHO05D009821 3.3e-09 64.7 41 78.0
CAN.G1046.7 Capsicum annuum HOM05D007996 ORTHO05D009821 4.3e-09 64.3 64 62.5
Lalb_Chr07g0183251 Lupinus albus HOM05D007996 ORTHO05D009821 4.3e-09 64.3 67 56.7
Potri.012G094000 Populus trichocarpa HOM05D007996 ORTHO05D009821 4.3e-09 64.3 43 74.4
Haze_07260 Corylus avellana HOM05D007996 ORTHO05D009821 7.4e-09 63.5 67 56.7
Prupe.5G156000 Prunus persica HOM05D007996 ORTHO05D009821 7.4e-09 63.5 71 53.5
Cpa.g.sc4.79 Carica papaya HOM05D007996 ORTHO05D009821 9.7e-09 63.2 41 75.6
Potri.015G091300 Populus trichocarpa HOM05D007996 ORTHO05D009821 1.3e-08 62.8 41 75.6
Phvul.009G168600 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 2.2e-08 62.0 62 61.3
Manes.06G116300 Manihot esculenta HOM05D007996 ORTHO05D009821 2.8e-08 61.6 41 73.2
Solyc06g071930.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 2.8e-08 61.6 63 58.7
Sopen06g028210 Solanum pennellii HOM05D007996 ORTHO05D009821 2.8e-08 61.6 63 58.7
PGSC0003DMG400027111 Solanum tuberosum HOM05D007996 ORTHO05D009821 2.8e-08 61.6 63 58.7
EL10Ac7g18091 Beta vulgaris HOM05D007996 ORTHO05D009821 3.7e-08 61.2 72 52.8
vmacro19229 Vaccinium macrocarpon HOM05D007996 ORTHO05D009821 3.7e-08 61.2 73 50.7
CSS0022418 Camellia sinensis var. sinensis HOM05D007996 ORTHO05D009821 4.8e-08 60.8 68 51.5
Actinidia16189 Actinidia chinensis HOM05D007996 ORTHO05D009821 6.3e-08 60.5 42 71.4
Glyma.04G193300 Glycine max HOM05D007996 ORTHO05D009821 1.4e-07 59.3 61 59.0
Hma1.2p1_0014F.1_g009860 Hydrangea macrophylla HOM05D007996 ORTHO05D009821 1.4e-07 59.3 78 44.9
Lalb_Chr08g0236981 Lupinus albus HOM05D007996 ORTHO05D009821 1.4e-07 59.3 66 51.5
AUR62025676 Chenopodium quinoa HOM05D007996 ORTHO05D009821 1.8e-07 58.9 67 52.2
PGR044G0405 Punica granatum HOM05D007996 ORTHO05D009821 2.4e-07 58.5 63 52.4
Rhsim08G0186300 Rhododendron simsii HOM05D007996 ORTHO05D009821 4.1e-07 57.8 36 77.8
FAN08G0192 Fragaria x ananassa HOM05D007996 ORTHO05D009821 5.3e-07 57.4 65 50.8
RcHm_v2.0_Chr7g0190871 Rosa chinensis HOM05D007996 ORTHO05D009821 9.1e-07 56.6 67 50.7
FAN18G2201 Fragaria x ananassa HOM05D007996 ORTHO05D009821 1.2e-06 56.2 65 49.2
Peaxi162Scf00089g00319 Petunia axillaris HOM05D007996 ORTHO05D009821 1.5e-06 55.8 59 59.3
Solyc03g110990.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 2.6e-06 55.1 61 54.1
Aqoxy5G03550 Aquilegia oxysepala HOM05D007996 ORTHO05D009821 4.5e-06 54.3 70 51.4
Nn3g16560 Nelumbo nucifera HOM05D007996 ORTHO05D009821 4.5e-06 54.3 39 71.8
Nitab4.5_0005327g0040 Nicotiana tabacum HOM05D007996 ORTHO05D009821 4.5e-06 54.3 62 58.1
SalBow5G3809 Salvia bowleyana HOM05D007996 ORTHO05D009821 5.9e-06 53.9 67 46.3


User provided reference genes

Program Settings